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Scientific Method

Science is an enormously successful human enterprise. The study of scientific method is the attempt to discern the activities by which that success is achieved. Among the activities often identified as characteristic of science are systematic observation and experimentation, inductive and deductive reasoning, and the formation and testing of hypotheses and theories. How these are carried out in detail can vary greatly, but characteristics like these have been looked to as a way of demarcating scientific activity from non-science, where only enterprises which employ some canonical form of scientific method or methods should be considered science (see also the entry on science and pseudo-science ). Others have questioned whether there is anything like a fixed toolkit of methods which is common across science and only science. Some reject privileging one view of method as part of rejecting broader views about the nature of science, such as naturalism (Dupré 2004); some reject any restriction in principle (pluralism).

Scientific method should be distinguished from the aims and products of science, such as knowledge, predictions, or control. Methods are the means by which those goals are achieved. Scientific method should also be distinguished from meta-methodology, which includes the values and justifications behind a particular characterization of scientific method (i.e., a methodology) — values such as objectivity, reproducibility, simplicity, or past successes. Methodological rules are proposed to govern method and it is a meta-methodological question whether methods obeying those rules satisfy given values. Finally, method is distinct, to some degree, from the detailed and contextual practices through which methods are implemented. The latter might range over: specific laboratory techniques; mathematical formalisms or other specialized languages used in descriptions and reasoning; technological or other material means; ways of communicating and sharing results, whether with other scientists or with the public at large; or the conventions, habits, enforced customs, and institutional controls over how and what science is carried out.

While it is important to recognize these distinctions, their boundaries are fuzzy. Hence, accounts of method cannot be entirely divorced from their methodological and meta-methodological motivations or justifications, Moreover, each aspect plays a crucial role in identifying methods. Disputes about method have therefore played out at the detail, rule, and meta-rule levels. Changes in beliefs about the certainty or fallibility of scientific knowledge, for instance (which is a meta-methodological consideration of what we can hope for methods to deliver), have meant different emphases on deductive and inductive reasoning, or on the relative importance attached to reasoning over observation (i.e., differences over particular methods.) Beliefs about the role of science in society will affect the place one gives to values in scientific method.

The issue which has shaped debates over scientific method the most in the last half century is the question of how pluralist do we need to be about method? Unificationists continue to hold out for one method essential to science; nihilism is a form of radical pluralism, which considers the effectiveness of any methodological prescription to be so context sensitive as to render it not explanatory on its own. Some middle degree of pluralism regarding the methods embodied in scientific practice seems appropriate. But the details of scientific practice vary with time and place, from institution to institution, across scientists and their subjects of investigation. How significant are the variations for understanding science and its success? How much can method be abstracted from practice? This entry describes some of the attempts to characterize scientific method or methods, as well as arguments for a more context-sensitive approach to methods embedded in actual scientific practices.

1. Overview and organizing themes

2. historical review: aristotle to mill, 3.1 logical constructionism and operationalism, 3.2. h-d as a logic of confirmation, 3.3. popper and falsificationism, 3.4 meta-methodology and the end of method, 4. statistical methods for hypothesis testing, 5.1 creative and exploratory practices.

• 5.2 Computer methods and the ‘new ways’ of doing science

6.1 “The scientific method” in science education and as seen by scientists

6.2 privileged methods and ‘gold standards’, 6.3 scientific method in the court room, 6.4 deviating practices, 7. conclusion, other internet resources, related entries.

This entry could have been given the title Scientific Methods and gone on to fill volumes, or it could have been extremely short, consisting of a brief summary rejection of the idea that there is any such thing as a unique Scientific Method at all. Both unhappy prospects are due to the fact that scientific activity varies so much across disciplines, times, places, and scientists that any account which manages to unify it all will either consist of overwhelming descriptive detail, or trivial generalizations.

The choice of scope for the present entry is more optimistic, taking a cue from the recent movement in philosophy of science toward a greater attention to practice: to what scientists actually do. This “turn to practice” can be seen as the latest form of studies of methods in science, insofar as it represents an attempt at understanding scientific activity, but through accounts that are neither meant to be universal and unified, nor singular and narrowly descriptive. To some extent, different scientists at different times and places can be said to be using the same method even though, in practice, the details are different.

Whether the context in which methods are carried out is relevant, or to what extent, will depend largely on what one takes the aims of science to be and what one’s own aims are. For most of the history of scientific methodology the assumption has been that the most important output of science is knowledge and so the aim of methodology should be to discover those methods by which scientific knowledge is generated.

Science was seen to embody the most successful form of reasoning (but which form?) to the most certain knowledge claims (but how certain?) on the basis of systematically collected evidence (but what counts as evidence, and should the evidence of the senses take precedence, or rational insight?) Section 2 surveys some of the history, pointing to two major themes. One theme is seeking the right balance between observation and reasoning (and the attendant forms of reasoning which employ them); the other is how certain scientific knowledge is or can be.

Section 3 turns to 20 th century debates on scientific method. In the second half of the 20 th century the epistemic privilege of science faced several challenges and many philosophers of science abandoned the reconstruction of the logic of scientific method. Views changed significantly regarding which functions of science ought to be captured and why. For some, the success of science was better identified with social or cultural features. Historical and sociological turns in the philosophy of science were made, with a demand that greater attention be paid to the non-epistemic aspects of science, such as sociological, institutional, material, and political factors. Even outside of those movements there was an increased specialization in the philosophy of science, with more and more focus on specific fields within science. The combined upshot was very few philosophers arguing any longer for a grand unified methodology of science. Sections 3 and 4 surveys the main positions on scientific method in 20 th century philosophy of science, focusing on where they differ in their preference for confirmation or falsification or for waiving the idea of a special scientific method altogether.

In recent decades, attention has primarily been paid to scientific activities traditionally falling under the rubric of method, such as experimental design and general laboratory practice, the use of statistics, the construction and use of models and diagrams, interdisciplinary collaboration, and science communication. Sections 4–6 attempt to construct a map of the current domains of the study of methods in science.

As these sections illustrate, the question of method is still central to the discourse about science. Scientific method remains a topic for education, for science policy, and for scientists. It arises in the public domain where the demarcation or status of science is at issue. Some philosophers have recently returned, therefore, to the question of what it is that makes science a unique cultural product. This entry will close with some of these recent attempts at discerning and encapsulating the activities by which scientific knowledge is achieved.

Attempting a history of scientific method compounds the vast scope of the topic. This section briefly surveys the background to modern methodological debates. What can be called the classical view goes back to antiquity, and represents a point of departure for later divergences. [ 1 ]

We begin with a point made by Laudan (1968) in his historical survey of scientific method:

Perhaps the most serious inhibition to the emergence of the history of theories of scientific method as a respectable area of study has been the tendency to conflate it with the general history of epistemology, thereby assuming that the narrative categories and classificatory pigeon-holes applied to the latter are also basic to the former. (1968: 5)

To see knowledge about the natural world as falling under knowledge more generally is an understandable conflation. Histories of theories of method would naturally employ the same narrative categories and classificatory pigeon holes. An important theme of the history of epistemology, for example, is the unification of knowledge, a theme reflected in the question of the unification of method in science. Those who have identified differences in kinds of knowledge have often likewise identified different methods for achieving that kind of knowledge (see the entry on the unity of science ).

Different views on what is known, how it is known, and what can be known are connected. Plato distinguished the realms of things into the visible and the intelligible ( The Republic , 510a, in Cooper 1997). Only the latter, the Forms, could be objects of knowledge. The intelligible truths could be known with the certainty of geometry and deductive reasoning. What could be observed of the material world, however, was by definition imperfect and deceptive, not ideal. The Platonic way of knowledge therefore emphasized reasoning as a method, downplaying the importance of observation. Aristotle disagreed, locating the Forms in the natural world as the fundamental principles to be discovered through the inquiry into nature ( Metaphysics Z , in Barnes 1984).

Aristotle is recognized as giving the earliest systematic treatise on the nature of scientific inquiry in the western tradition, one which embraced observation and reasoning about the natural world. In the Prior and Posterior Analytics , Aristotle reflects first on the aims and then the methods of inquiry into nature. A number of features can be found which are still considered by most to be essential to science. For Aristotle, empiricism, careful observation (but passive observation, not controlled experiment), is the starting point. The aim is not merely recording of facts, though. For Aristotle, science ( epistêmê ) is a body of properly arranged knowledge or learning—the empirical facts, but also their ordering and display are of crucial importance. The aims of discovery, ordering, and display of facts partly determine the methods required of successful scientific inquiry. Also determinant is the nature of the knowledge being sought, and the explanatory causes proper to that kind of knowledge (see the discussion of the four causes in the entry on Aristotle on causality ).

In addition to careful observation, then, scientific method requires a logic as a system of reasoning for properly arranging, but also inferring beyond, what is known by observation. Methods of reasoning may include induction, prediction, or analogy, among others. Aristotle’s system (along with his catalogue of fallacious reasoning) was collected under the title the Organon . This title would be echoed in later works on scientific reasoning, such as Novum Organon by Francis Bacon, and Novum Organon Restorum by William Whewell (see below). In Aristotle’s Organon reasoning is divided primarily into two forms, a rough division which persists into modern times. The division, known most commonly today as deductive versus inductive method, appears in other eras and methodologies as analysis/​synthesis, non-ampliative/​ampliative, or even confirmation/​verification. The basic idea is there are two “directions” to proceed in our methods of inquiry: one away from what is observed, to the more fundamental, general, and encompassing principles; the other, from the fundamental and general to instances or implications of principles.

The basic aim and method of inquiry identified here can be seen as a theme running throughout the next two millennia of reflection on the correct way to seek after knowledge: carefully observe nature and then seek rules or principles which explain or predict its operation. The Aristotelian corpus provided the framework for a commentary tradition on scientific method independent of science itself (cosmos versus physics.) During the medieval period, figures such as Albertus Magnus (1206–1280), Thomas Aquinas (1225–1274), Robert Grosseteste (1175–1253), Roger Bacon (1214/1220–1292), William of Ockham (1287–1347), Andreas Vesalius (1514–1546), Giacomo Zabarella (1533–1589) all worked to clarify the kind of knowledge obtainable by observation and induction, the source of justification of induction, and best rules for its application. [ 2 ] Many of their contributions we now think of as essential to science (see also Laudan 1968). As Aristotle and Plato had employed a framework of reasoning either “to the forms” or “away from the forms”, medieval thinkers employed directions away from the phenomena or back to the phenomena. In analysis, a phenomena was examined to discover its basic explanatory principles; in synthesis, explanations of a phenomena were constructed from first principles.

During the Scientific Revolution these various strands of argument, experiment, and reason were forged into a dominant epistemic authority. The 16 th –18 th centuries were a period of not only dramatic advance in knowledge about the operation of the natural world—advances in mechanical, medical, biological, political, economic explanations—but also of self-awareness of the revolutionary changes taking place, and intense reflection on the source and legitimation of the method by which the advances were made. The struggle to establish the new authority included methodological moves. The Book of Nature, according to the metaphor of Galileo Galilei (1564–1642) or Francis Bacon (1561–1626), was written in the language of mathematics, of geometry and number. This motivated an emphasis on mathematical description and mechanical explanation as important aspects of scientific method. Through figures such as Henry More and Ralph Cudworth, a neo-Platonic emphasis on the importance of metaphysical reflection on nature behind appearances, particularly regarding the spiritual as a complement to the purely mechanical, remained an important methodological thread of the Scientific Revolution (see the entries on Cambridge platonists ; Boyle ; Henry More ; Galileo ).

In Novum Organum (1620), Bacon was critical of the Aristotelian method for leaping from particulars to universals too quickly. The syllogistic form of reasoning readily mixed those two types of propositions. Bacon aimed at the invention of new arts, principles, and directions. His method would be grounded in methodical collection of observations, coupled with correction of our senses (and particularly, directions for the avoidance of the Idols, as he called them, kinds of systematic errors to which naïve observers are prone.) The community of scientists could then climb, by a careful, gradual and unbroken ascent, to reliable general claims.

Bacon’s method has been criticized as impractical and too inflexible for the practicing scientist. Whewell would later criticize Bacon in his System of Logic for paying too little attention to the practices of scientists. It is hard to find convincing examples of Bacon’s method being put in to practice in the history of science, but there are a few who have been held up as real examples of 16 th century scientific, inductive method, even if not in the rigid Baconian mold: figures such as Robert Boyle (1627–1691) and William Harvey (1578–1657) (see the entry on Bacon ).

It is to Isaac Newton (1642–1727), however, that historians of science and methodologists have paid greatest attention. Given the enormous success of his Principia Mathematica and Opticks , this is understandable. The study of Newton’s method has had two main thrusts: the implicit method of the experiments and reasoning presented in the Opticks, and the explicit methodological rules given as the Rules for Philosophising (the Regulae) in Book III of the Principia . [ 3 ] Newton’s law of gravitation, the linchpin of his new cosmology, broke with explanatory conventions of natural philosophy, first for apparently proposing action at a distance, but more generally for not providing “true”, physical causes. The argument for his System of the World ( Principia , Book III) was based on phenomena, not reasoned first principles. This was viewed (mainly on the continent) as insufficient for proper natural philosophy. The Regulae counter this objection, re-defining the aims of natural philosophy by re-defining the method natural philosophers should follow. (See the entry on Newton’s philosophy .)

To his list of methodological prescriptions should be added Newton’s famous phrase “ hypotheses non fingo ” (commonly translated as “I frame no hypotheses”.) The scientist was not to invent systems but infer explanations from observations, as Bacon had advocated. This would come to be known as inductivism. In the century after Newton, significant clarifications of the Newtonian method were made. Colin Maclaurin (1698–1746), for instance, reconstructed the essential structure of the method as having complementary analysis and synthesis phases, one proceeding away from the phenomena in generalization, the other from the general propositions to derive explanations of new phenomena. Denis Diderot (1713–1784) and editors of the Encyclopédie did much to consolidate and popularize Newtonianism, as did Francesco Algarotti (1721–1764). The emphasis was often the same, as much on the character of the scientist as on their process, a character which is still commonly assumed. The scientist is humble in the face of nature, not beholden to dogma, obeys only his eyes, and follows the truth wherever it leads. It was certainly Voltaire (1694–1778) and du Chatelet (1706–1749) who were most influential in propagating the latter vision of the scientist and their craft, with Newton as hero. Scientific method became a revolutionary force of the Enlightenment. (See also the entries on Newton , Leibniz , Descartes , Boyle , Hume , enlightenment , as well as Shank 2008 for a historical overview.)

Not all 18 th century reflections on scientific method were so celebratory. Famous also are George Berkeley’s (1685–1753) attack on the mathematics of the new science, as well as the over-emphasis of Newtonians on observation; and David Hume’s (1711–1776) undermining of the warrant offered for scientific claims by inductive justification (see the entries on: George Berkeley ; David Hume ; Hume’s Newtonianism and Anti-Newtonianism ). Hume’s problem of induction motivated Immanuel Kant (1724–1804) to seek new foundations for empirical method, though as an epistemic reconstruction, not as any set of practical guidelines for scientists. Both Hume and Kant influenced the methodological reflections of the next century, such as the debate between Mill and Whewell over the certainty of inductive inferences in science.

The debate between John Stuart Mill (1806–1873) and William Whewell (1794–1866) has become the canonical methodological debate of the 19 th century. Although often characterized as a debate between inductivism and hypothetico-deductivism, the role of the two methods on each side is actually more complex. On the hypothetico-deductive account, scientists work to come up with hypotheses from which true observational consequences can be deduced—hence, hypothetico-deductive. Because Whewell emphasizes both hypotheses and deduction in his account of method, he can be seen as a convenient foil to the inductivism of Mill. However, equally if not more important to Whewell’s portrayal of scientific method is what he calls the “fundamental antithesis”. Knowledge is a product of the objective (what we see in the world around us) and subjective (the contributions of our mind to how we perceive and understand what we experience, which he called the Fundamental Ideas). Both elements are essential according to Whewell, and he was therefore critical of Kant for too much focus on the subjective, and John Locke (1632–1704) and Mill for too much focus on the senses. Whewell’s fundamental ideas can be discipline relative. An idea can be fundamental even if it is necessary for knowledge only within a given scientific discipline (e.g., chemical affinity for chemistry). This distinguishes fundamental ideas from the forms and categories of intuition of Kant. (See the entry on Whewell .)

Clarifying fundamental ideas would therefore be an essential part of scientific method and scientific progress. Whewell called this process “Discoverer’s Induction”. It was induction, following Bacon or Newton, but Whewell sought to revive Bacon’s account by emphasising the role of ideas in the clear and careful formulation of inductive hypotheses. Whewell’s induction is not merely the collecting of objective facts. The subjective plays a role through what Whewell calls the Colligation of Facts, a creative act of the scientist, the invention of a theory. A theory is then confirmed by testing, where more facts are brought under the theory, called the Consilience of Inductions. Whewell felt that this was the method by which the true laws of nature could be discovered: clarification of fundamental concepts, clever invention of explanations, and careful testing. Mill, in his critique of Whewell, and others who have cast Whewell as a fore-runner of the hypothetico-deductivist view, seem to have under-estimated the importance of this discovery phase in Whewell’s understanding of method (Snyder 1997a,b, 1999). Down-playing the discovery phase would come to characterize methodology of the early 20 th century (see section 3 ).

Mill, in his System of Logic , put forward a narrower view of induction as the essence of scientific method. For Mill, induction is the search first for regularities among events. Among those regularities, some will continue to hold for further observations, eventually gaining the status of laws. One can also look for regularities among the laws discovered in a domain, i.e., for a law of laws. Which “law law” will hold is time and discipline dependent and open to revision. One example is the Law of Universal Causation, and Mill put forward specific methods for identifying causes—now commonly known as Mill’s methods. These five methods look for circumstances which are common among the phenomena of interest, those which are absent when the phenomena are, or those for which both vary together. Mill’s methods are still seen as capturing basic intuitions about experimental methods for finding the relevant explanatory factors ( System of Logic (1843), see Mill entry). The methods advocated by Whewell and Mill, in the end, look similar. Both involve inductive generalization to covering laws. They differ dramatically, however, with respect to the necessity of the knowledge arrived at; that is, at the meta-methodological level (see the entries on Whewell and Mill entries).

3. Logic of method and critical responses

The quantum and relativistic revolutions in physics in the early 20 th century had a profound effect on methodology. Conceptual foundations of both theories were taken to show the defeasibility of even the most seemingly secure intuitions about space, time and bodies. Certainty of knowledge about the natural world was therefore recognized as unattainable. Instead a renewed empiricism was sought which rendered science fallible but still rationally justifiable.

Analyses of the reasoning of scientists emerged, according to which the aspects of scientific method which were of primary importance were the means of testing and confirming of theories. A distinction in methodology was made between the contexts of discovery and justification. The distinction could be used as a wedge between the particularities of where and how theories or hypotheses are arrived at, on the one hand, and the underlying reasoning scientists use (whether or not they are aware of it) when assessing theories and judging their adequacy on the basis of the available evidence. By and large, for most of the 20 th century, philosophy of science focused on the second context, although philosophers differed on whether to focus on confirmation or refutation as well as on the many details of how confirmation or refutation could or could not be brought about. By the mid-20 th century these attempts at defining the method of justification and the context distinction itself came under pressure. During the same period, philosophy of science developed rapidly, and from section 4 this entry will therefore shift from a primarily historical treatment of the scientific method towards a primarily thematic one.

Advances in logic and probability held out promise of the possibility of elaborate reconstructions of scientific theories and empirical method, the best example being Rudolf Carnap’s The Logical Structure of the World (1928). Carnap attempted to show that a scientific theory could be reconstructed as a formal axiomatic system—that is, a logic. That system could refer to the world because some of its basic sentences could be interpreted as observations or operations which one could perform to test them. The rest of the theoretical system, including sentences using theoretical or unobservable terms (like electron or force) would then either be meaningful because they could be reduced to observations, or they had purely logical meanings (called analytic, like mathematical identities). This has been referred to as the verifiability criterion of meaning. According to the criterion, any statement not either analytic or verifiable was strictly meaningless. Although the view was endorsed by Carnap in 1928, he would later come to see it as too restrictive (Carnap 1956). Another familiar version of this idea is operationalism of Percy William Bridgman. In The Logic of Modern Physics (1927) Bridgman asserted that every physical concept could be defined in terms of the operations one would perform to verify the application of that concept. Making good on the operationalisation of a concept even as simple as length, however, can easily become enormously complex (for measuring very small lengths, for instance) or impractical (measuring large distances like light years.)

Carl Hempel’s (1950, 1951) criticisms of the verifiability criterion of meaning had enormous influence. He pointed out that universal generalizations, such as most scientific laws, were not strictly meaningful on the criterion. Verifiability and operationalism both seemed too restrictive to capture standard scientific aims and practice. The tenuous connection between these reconstructions and actual scientific practice was criticized in another way. In both approaches, scientific methods are instead recast in methodological roles. Measurements, for example, were looked to as ways of giving meanings to terms. The aim of the philosopher of science was not to understand the methods per se , but to use them to reconstruct theories, their meanings, and their relation to the world. When scientists perform these operations, however, they will not report that they are doing them to give meaning to terms in a formal axiomatic system. This disconnect between methodology and the details of actual scientific practice would seem to violate the empiricism the Logical Positivists and Bridgman were committed to. The view that methodology should correspond to practice (to some extent) has been called historicism, or intuitionism. We turn to these criticisms and responses in section 3.4 . [ 4 ]

Positivism also had to contend with the recognition that a purely inductivist approach, along the lines of Bacon-Newton-Mill, was untenable. There was no pure observation, for starters. All observation was theory laden. Theory is required to make any observation, therefore not all theory can be derived from observation alone. (See the entry on theory and observation in science .) Even granting an observational basis, Hume had already pointed out that one could not deductively justify inductive conclusions without begging the question by presuming the success of the inductive method. Likewise, positivist attempts at analyzing how a generalization can be confirmed by observations of its instances were subject to a number of criticisms. Goodman (1965) and Hempel (1965) both point to paradoxes inherent in standard accounts of confirmation. Recent attempts at explaining how observations can serve to confirm a scientific theory are discussed in section 4 below.

The standard starting point for a non-inductive analysis of the logic of confirmation is known as the Hypothetico-Deductive (H-D) method. In its simplest form, a sentence of a theory which expresses some hypothesis is confirmed by its true consequences. As noted in section 2 , this method had been advanced by Whewell in the 19 th century, as well as Nicod (1924) and others in the 20 th century. Often, Hempel’s (1966) description of the H-D method, illustrated by the case of Semmelweiss’ inferential procedures in establishing the cause of childbed fever, has been presented as a key account of H-D as well as a foil for criticism of the H-D account of confirmation (see, for example, Lipton’s (2004) discussion of inference to the best explanation; also the entry on confirmation ). Hempel described Semmelsweiss’ procedure as examining various hypotheses explaining the cause of childbed fever. Some hypotheses conflicted with observable facts and could be rejected as false immediately. Others needed to be tested experimentally by deducing which observable events should follow if the hypothesis were true (what Hempel called the test implications of the hypothesis), then conducting an experiment and observing whether or not the test implications occurred. If the experiment showed the test implication to be false, the hypothesis could be rejected. If the experiment showed the test implications to be true, however, this did not prove the hypothesis true. The confirmation of a test implication does not verify a hypothesis, though Hempel did allow that “it provides at least some support, some corroboration or confirmation for it” (Hempel 1966: 8). The degree of this support then depends on the quantity, variety and precision of the supporting evidence.

Another approach that took off from the difficulties with inductive inference was Karl Popper’s critical rationalism or falsificationism (Popper 1959, 1963). Falsification is deductive and similar to H-D in that it involves scientists deducing observational consequences from the hypothesis under test. For Popper, however, the important point was not the degree of confirmation that successful prediction offered to a hypothesis. The crucial thing was the logical asymmetry between confirmation, based on inductive inference, and falsification, which can be based on a deductive inference. (This simple opposition was later questioned, by Lakatos, among others. See the entry on historicist theories of scientific rationality. )

Popper stressed that, regardless of the amount of confirming evidence, we can never be certain that a hypothesis is true without committing the fallacy of affirming the consequent. Instead, Popper introduced the notion of corroboration as a measure for how well a theory or hypothesis has survived previous testing—but without implying that this is also a measure for the probability that it is true.

Popper was also motivated by his doubts about the scientific status of theories like the Marxist theory of history or psycho-analysis, and so wanted to demarcate between science and pseudo-science. Popper saw this as an importantly different distinction than demarcating science from metaphysics. The latter demarcation was the primary concern of many logical empiricists. Popper used the idea of falsification to draw a line instead between pseudo and proper science. Science was science because its method involved subjecting theories to rigorous tests which offered a high probability of failing and thus refuting the theory.

A commitment to the risk of failure was important. Avoiding falsification could be done all too easily. If a consequence of a theory is inconsistent with observations, an exception can be added by introducing auxiliary hypotheses designed explicitly to save the theory, so-called ad hoc modifications. This Popper saw done in pseudo-science where ad hoc theories appeared capable of explaining anything in their field of application. In contrast, science is risky. If observations showed the predictions from a theory to be wrong, the theory would be refuted. Hence, scientific hypotheses must be falsifiable. Not only must there exist some possible observation statement which could falsify the hypothesis or theory, were it observed, (Popper called these the hypothesis’ potential falsifiers) it is crucial to the Popperian scientific method that such falsifications be sincerely attempted on a regular basis.

The more potential falsifiers of a hypothesis, the more falsifiable it would be, and the more the hypothesis claimed. Conversely, hypotheses without falsifiers claimed very little or nothing at all. Originally, Popper thought that this meant the introduction of ad hoc hypotheses only to save a theory should not be countenanced as good scientific method. These would undermine the falsifiabililty of a theory. However, Popper later came to recognize that the introduction of modifications (immunizations, he called them) was often an important part of scientific development. Responding to surprising or apparently falsifying observations often generated important new scientific insights. Popper’s own example was the observed motion of Uranus which originally did not agree with Newtonian predictions. The ad hoc hypothesis of an outer planet explained the disagreement and led to further falsifiable predictions. Popper sought to reconcile the view by blurring the distinction between falsifiable and not falsifiable, and speaking instead of degrees of testability (Popper 1985: 41f.).

From the 1960s on, sustained meta-methodological criticism emerged that drove philosophical focus away from scientific method. A brief look at those criticisms follows, with recommendations for further reading at the end of the entry.

Thomas Kuhn’s The Structure of Scientific Revolutions (1962) begins with a well-known shot across the bow for philosophers of science:

History, if viewed as a repository for more than anecdote or chronology, could produce a decisive transformation in the image of science by which we are now possessed. (1962: 1)

The image Kuhn thought needed transforming was the a-historical, rational reconstruction sought by many of the Logical Positivists, though Carnap and other positivists were actually quite sympathetic to Kuhn’s views. (See the entry on the Vienna Circle .) Kuhn shares with other of his contemporaries, such as Feyerabend and Lakatos, a commitment to a more empirical approach to philosophy of science. Namely, the history of science provides important data, and necessary checks, for philosophy of science, including any theory of scientific method.

The history of science reveals, according to Kuhn, that scientific development occurs in alternating phases. During normal science, the members of the scientific community adhere to the paradigm in place. Their commitment to the paradigm means a commitment to the puzzles to be solved and the acceptable ways of solving them. Confidence in the paradigm remains so long as steady progress is made in solving the shared puzzles. Method in this normal phase operates within a disciplinary matrix (Kuhn’s later concept of a paradigm) which includes standards for problem solving, and defines the range of problems to which the method should be applied. An important part of a disciplinary matrix is the set of values which provide the norms and aims for scientific method. The main values that Kuhn identifies are prediction, problem solving, simplicity, consistency, and plausibility.

An important by-product of normal science is the accumulation of puzzles which cannot be solved with resources of the current paradigm. Once accumulation of these anomalies has reached some critical mass, it can trigger a communal shift to a new paradigm and a new phase of normal science. Importantly, the values that provide the norms and aims for scientific method may have transformed in the meantime. Method may therefore be relative to discipline, time or place

Feyerabend also identified the aims of science as progress, but argued that any methodological prescription would only stifle that progress (Feyerabend 1988). His arguments are grounded in re-examining accepted “myths” about the history of science. Heroes of science, like Galileo, are shown to be just as reliant on rhetoric and persuasion as they are on reason and demonstration. Others, like Aristotle, are shown to be far more reasonable and far-reaching in their outlooks then they are given credit for. As a consequence, the only rule that could provide what he took to be sufficient freedom was the vacuous “anything goes”. More generally, even the methodological restriction that science is the best way to pursue knowledge, and to increase knowledge, is too restrictive. Feyerabend suggested instead that science might, in fact, be a threat to a free society, because it and its myth had become so dominant (Feyerabend 1978).

An even more fundamental kind of criticism was offered by several sociologists of science from the 1970s onwards who rejected the methodology of providing philosophical accounts for the rational development of science and sociological accounts of the irrational mistakes. Instead, they adhered to a symmetry thesis on which any causal explanation of how scientific knowledge is established needs to be symmetrical in explaining truth and falsity, rationality and irrationality, success and mistakes, by the same causal factors (see, e.g., Barnes and Bloor 1982, Bloor 1991). Movements in the Sociology of Science, like the Strong Programme, or in the social dimensions and causes of knowledge more generally led to extended and close examination of detailed case studies in contemporary science and its history. (See the entries on the social dimensions of scientific knowledge and social epistemology .) Well-known examinations by Latour and Woolgar (1979/1986), Knorr-Cetina (1981), Pickering (1984), Shapin and Schaffer (1985) seem to bear out that it was social ideologies (on a macro-scale) or individual interactions and circumstances (on a micro-scale) which were the primary causal factors in determining which beliefs gained the status of scientific knowledge. As they saw it therefore, explanatory appeals to scientific method were not empirically grounded.

A late, and largely unexpected, criticism of scientific method came from within science itself. Beginning in the early 2000s, a number of scientists attempting to replicate the results of published experiments could not do so. There may be close conceptual connection between reproducibility and method. For example, if reproducibility means that the same scientific methods ought to produce the same result, and all scientific results ought to be reproducible, then whatever it takes to reproduce a scientific result ought to be called scientific method. Space limits us to the observation that, insofar as reproducibility is a desired outcome of proper scientific method, it is not strictly a part of scientific method. (See the entry on reproducibility of scientific results .)

By the close of the 20 th century the search for the scientific method was flagging. Nola and Sankey (2000b) could introduce their volume on method by remarking that “For some, the whole idea of a theory of scientific method is yester-year’s debate …”.

Despite the many difficulties that philosophers encountered in trying to providing a clear methodology of conformation (or refutation), still important progress has been made on understanding how observation can provide evidence for a given theory. Work in statistics has been crucial for understanding how theories can be tested empirically, and in recent decades a huge literature has developed that attempts to recast confirmation in Bayesian terms. Here these developments can be covered only briefly, and we refer to the entry on confirmation for further details and references.

Statistics has come to play an increasingly important role in the methodology of the experimental sciences from the 19 th century onwards. At that time, statistics and probability theory took on a methodological role as an analysis of inductive inference, and attempts to ground the rationality of induction in the axioms of probability theory have continued throughout the 20 th century and in to the present. Developments in the theory of statistics itself, meanwhile, have had a direct and immense influence on the experimental method, including methods for measuring the uncertainty of observations such as the Method of Least Squares developed by Legendre and Gauss in the early 19 th century, criteria for the rejection of outliers proposed by Peirce by the mid-19 th century, and the significance tests developed by Gosset (a.k.a. “Student”), Fisher, Neyman & Pearson and others in the 1920s and 1930s (see, e.g., Swijtink 1987 for a brief historical overview; and also the entry on C.S. Peirce ).

These developments within statistics then in turn led to a reflective discussion among both statisticians and philosophers of science on how to perceive the process of hypothesis testing: whether it was a rigorous statistical inference that could provide a numerical expression of the degree of confidence in the tested hypothesis, or if it should be seen as a decision between different courses of actions that also involved a value component. This led to a major controversy among Fisher on the one side and Neyman and Pearson on the other (see especially Fisher 1955, Neyman 1956 and Pearson 1955, and for analyses of the controversy, e.g., Howie 2002, Marks 2000, Lenhard 2006). On Fisher’s view, hypothesis testing was a methodology for when to accept or reject a statistical hypothesis, namely that a hypothesis should be rejected by evidence if this evidence would be unlikely relative to other possible outcomes, given the hypothesis were true. In contrast, on Neyman and Pearson’s view, the consequence of error also had to play a role when deciding between hypotheses. Introducing the distinction between the error of rejecting a true hypothesis (type I error) and accepting a false hypothesis (type II error), they argued that it depends on the consequences of the error to decide whether it is more important to avoid rejecting a true hypothesis or accepting a false one. Hence, Fisher aimed for a theory of inductive inference that enabled a numerical expression of confidence in a hypothesis. To him, the important point was the search for truth, not utility. In contrast, the Neyman-Pearson approach provided a strategy of inductive behaviour for deciding between different courses of action. Here, the important point was not whether a hypothesis was true, but whether one should act as if it was.

Similar discussions are found in the philosophical literature. On the one side, Churchman (1948) and Rudner (1953) argued that because scientific hypotheses can never be completely verified, a complete analysis of the methods of scientific inference includes ethical judgments in which the scientists must decide whether the evidence is sufficiently strong or that the probability is sufficiently high to warrant the acceptance of the hypothesis, which again will depend on the importance of making a mistake in accepting or rejecting the hypothesis. Others, such as Jeffrey (1956) and Levi (1960) disagreed and instead defended a value-neutral view of science on which scientists should bracket their attitudes, preferences, temperament, and values when assessing the correctness of their inferences. For more details on this value-free ideal in the philosophy of science and its historical development, see Douglas (2009) and Howard (2003). For a broad set of case studies examining the role of values in science, see e.g. Elliott & Richards 2017.

In recent decades, philosophical discussions of the evaluation of probabilistic hypotheses by statistical inference have largely focused on Bayesianism that understands probability as a measure of a person’s degree of belief in an event, given the available information, and frequentism that instead understands probability as a long-run frequency of a repeatable event. Hence, for Bayesians probabilities refer to a state of knowledge, whereas for frequentists probabilities refer to frequencies of events (see, e.g., Sober 2008, chapter 1 for a detailed introduction to Bayesianism and frequentism as well as to likelihoodism). Bayesianism aims at providing a quantifiable, algorithmic representation of belief revision, where belief revision is a function of prior beliefs (i.e., background knowledge) and incoming evidence. Bayesianism employs a rule based on Bayes’ theorem, a theorem of the probability calculus which relates conditional probabilities. The probability that a particular hypothesis is true is interpreted as a degree of belief, or credence, of the scientist. There will also be a probability and a degree of belief that a hypothesis will be true conditional on a piece of evidence (an observation, say) being true. Bayesianism proscribes that it is rational for the scientist to update their belief in the hypothesis to that conditional probability should it turn out that the evidence is, in fact, observed (see, e.g., Sprenger & Hartmann 2019 for a comprehensive treatment of Bayesian philosophy of science). Originating in the work of Neyman and Person, frequentism aims at providing the tools for reducing long-run error rates, such as the error-statistical approach developed by Mayo (1996) that focuses on how experimenters can avoid both type I and type II errors by building up a repertoire of procedures that detect errors if and only if they are present. Both Bayesianism and frequentism have developed over time, they are interpreted in different ways by its various proponents, and their relations to previous criticism to attempts at defining scientific method are seen differently by proponents and critics. The literature, surveys, reviews and criticism in this area are vast and the reader is referred to the entries on Bayesian epistemology and confirmation .

5. Method in Practice

Attention to scientific practice, as we have seen, is not itself new. However, the turn to practice in the philosophy of science of late can be seen as a correction to the pessimism with respect to method in philosophy of science in later parts of the 20 th century, and as an attempted reconciliation between sociological and rationalist explanations of scientific knowledge. Much of this work sees method as detailed and context specific problem-solving procedures, and methodological analyses to be at the same time descriptive, critical and advisory (see Nickles 1987 for an exposition of this view). The following section contains a survey of some of the practice focuses. In this section we turn fully to topics rather than chronology.

A problem with the distinction between the contexts of discovery and justification that figured so prominently in philosophy of science in the first half of the 20 th century (see section 2 ) is that no such distinction can be clearly seen in scientific activity (see Arabatzis 2006). Thus, in recent decades, it has been recognized that study of conceptual innovation and change should not be confined to psychology and sociology of science, but are also important aspects of scientific practice which philosophy of science should address (see also the entry on scientific discovery ). Looking for the practices that drive conceptual innovation has led philosophers to examine both the reasoning practices of scientists and the wide realm of experimental practices that are not directed narrowly at testing hypotheses, that is, exploratory experimentation.

Examining the reasoning practices of historical and contemporary scientists, Nersessian (2008) has argued that new scientific concepts are constructed as solutions to specific problems by systematic reasoning, and that of analogy, visual representation and thought-experimentation are among the important reasoning practices employed. These ubiquitous forms of reasoning are reliable—but also fallible—methods of conceptual development and change. On her account, model-based reasoning consists of cycles of construction, simulation, evaluation and adaption of models that serve as interim interpretations of the target problem to be solved. Often, this process will lead to modifications or extensions, and a new cycle of simulation and evaluation. However, Nersessian also emphasizes that

creative model-based reasoning cannot be applied as a simple recipe, is not always productive of solutions, and even its most exemplary usages can lead to incorrect solutions. (Nersessian 2008: 11)

Thus, while on the one hand she agrees with many previous philosophers that there is no logic of discovery, discoveries can derive from reasoned processes, such that a large and integral part of scientific practice is

the creation of concepts through which to comprehend, structure, and communicate about physical phenomena …. (Nersessian 1987: 11)

Similarly, work on heuristics for discovery and theory construction by scholars such as Darden (1991) and Bechtel & Richardson (1993) present science as problem solving and investigate scientific problem solving as a special case of problem-solving in general. Drawing largely on cases from the biological sciences, much of their focus has been on reasoning strategies for the generation, evaluation, and revision of mechanistic explanations of complex systems.

Addressing another aspect of the context distinction, namely the traditional view that the primary role of experiments is to test theoretical hypotheses according to the H-D model, other philosophers of science have argued for additional roles that experiments can play. The notion of exploratory experimentation was introduced to describe experiments driven by the desire to obtain empirical regularities and to develop concepts and classifications in which these regularities can be described (Steinle 1997, 2002; Burian 1997; Waters 2007)). However the difference between theory driven experimentation and exploratory experimentation should not be seen as a sharp distinction. Theory driven experiments are not always directed at testing hypothesis, but may also be directed at various kinds of fact-gathering, such as determining numerical parameters. Vice versa , exploratory experiments are usually informed by theory in various ways and are therefore not theory-free. Instead, in exploratory experiments phenomena are investigated without first limiting the possible outcomes of the experiment on the basis of extant theory about the phenomena.

The development of high throughput instrumentation in molecular biology and neighbouring fields has given rise to a special type of exploratory experimentation that collects and analyses very large amounts of data, and these new ‘omics’ disciplines are often said to represent a break with the ideal of hypothesis-driven science (Burian 2007; Elliott 2007; Waters 2007; O’Malley 2007) and instead described as data-driven research (Leonelli 2012; Strasser 2012) or as a special kind of “convenience experimentation” in which many experiments are done simply because they are extraordinarily convenient to perform (Krohs 2012).

5.2 Computer methods and ‘new ways’ of doing science

The field of omics just described is possible because of the ability of computers to process, in a reasonable amount of time, the huge quantities of data required. Computers allow for more elaborate experimentation (higher speed, better filtering, more variables, sophisticated coordination and control), but also, through modelling and simulations, might constitute a form of experimentation themselves. Here, too, we can pose a version of the general question of method versus practice: does the practice of using computers fundamentally change scientific method, or merely provide a more efficient means of implementing standard methods?

Because computers can be used to automate measurements, quantifications, calculations, and statistical analyses where, for practical reasons, these operations cannot be otherwise carried out, many of the steps involved in reaching a conclusion on the basis of an experiment are now made inside a “black box”, without the direct involvement or awareness of a human. This has epistemological implications, regarding what we can know, and how we can know it. To have confidence in the results, computer methods are therefore subjected to tests of verification and validation.

The distinction between verification and validation is easiest to characterize in the case of computer simulations. In a typical computer simulation scenario computers are used to numerically integrate differential equations for which no analytic solution is available. The equations are part of the model the scientist uses to represent a phenomenon or system under investigation. Verifying a computer simulation means checking that the equations of the model are being correctly approximated. Validating a simulation means checking that the equations of the model are adequate for the inferences one wants to make on the basis of that model.

A number of issues related to computer simulations have been raised. The identification of validity and verification as the testing methods has been criticized. Oreskes et al. (1994) raise concerns that “validiation”, because it suggests deductive inference, might lead to over-confidence in the results of simulations. The distinction itself is probably too clean, since actual practice in the testing of simulations mixes and moves back and forth between the two (Weissart 1997; Parker 2008a; Winsberg 2010). Computer simulations do seem to have a non-inductive character, given that the principles by which they operate are built in by the programmers, and any results of the simulation follow from those in-built principles in such a way that those results could, in principle, be deduced from the program code and its inputs. The status of simulations as experiments has therefore been examined (Kaufmann and Smarr 1993; Humphreys 1995; Hughes 1999; Norton and Suppe 2001). This literature considers the epistemology of these experiments: what we can learn by simulation, and also the kinds of justifications which can be given in applying that knowledge to the “real” world. (Mayo 1996; Parker 2008b). As pointed out, part of the advantage of computer simulation derives from the fact that huge numbers of calculations can be carried out without requiring direct observation by the experimenter/​simulator. At the same time, many of these calculations are approximations to the calculations which would be performed first-hand in an ideal situation. Both factors introduce uncertainties into the inferences drawn from what is observed in the simulation.

For many of the reasons described above, computer simulations do not seem to belong clearly to either the experimental or theoretical domain. Rather, they seem to crucially involve aspects of both. This has led some authors, such as Fox Keller (2003: 200) to argue that we ought to consider computer simulation a “qualitatively different way of doing science”. The literature in general tends to follow Kaufmann and Smarr (1993) in referring to computer simulation as a “third way” for scientific methodology (theoretical reasoning and experimental practice are the first two ways.). It should also be noted that the debates around these issues have tended to focus on the form of computer simulation typical in the physical sciences, where models are based on dynamical equations. Other forms of simulation might not have the same problems, or have problems of their own (see the entry on computer simulations in science ).

In recent years, the rapid development of machine learning techniques has prompted some scholars to suggest that the scientific method has become “obsolete” (Anderson 2008, Carrol and Goodstein 2009). This has resulted in an intense debate on the relative merit of data-driven and hypothesis-driven research (for samples, see e.g. Mazzocchi 2015 or Succi and Coveney 2018). For a detailed treatment of this topic, we refer to the entry scientific research and big data .

6. Discourse on scientific method

Despite philosophical disagreements, the idea of the scientific method still figures prominently in contemporary discourse on many different topics, both within science and in society at large. Often, reference to scientific method is used in ways that convey either the legend of a single, universal method characteristic of all science, or grants to a particular method or set of methods privilege as a special ‘gold standard’, often with reference to particular philosophers to vindicate the claims. Discourse on scientific method also typically arises when there is a need to distinguish between science and other activities, or for justifying the special status conveyed to science. In these areas, the philosophical attempts at identifying a set of methods characteristic for scientific endeavors are closely related to the philosophy of science’s classical problem of demarcation (see the entry on science and pseudo-science ) and to the philosophical analysis of the social dimension of scientific knowledge and the role of science in democratic society.

One of the settings in which the legend of a single, universal scientific method has been particularly strong is science education (see, e.g., Bauer 1992; McComas 1996; Wivagg & Allchin 2002). [ 5 ] Often, ‘the scientific method’ is presented in textbooks and educational web pages as a fixed four or five step procedure starting from observations and description of a phenomenon and progressing over formulation of a hypothesis which explains the phenomenon, designing and conducting experiments to test the hypothesis, analyzing the results, and ending with drawing a conclusion. Such references to a universal scientific method can be found in educational material at all levels of science education (Blachowicz 2009), and numerous studies have shown that the idea of a general and universal scientific method often form part of both students’ and teachers’ conception of science (see, e.g., Aikenhead 1987; Osborne et al. 2003). In response, it has been argued that science education need to focus more on teaching about the nature of science, although views have differed on whether this is best done through student-led investigations, contemporary cases, or historical cases (Allchin, Andersen & Nielsen 2014)

Although occasionally phrased with reference to the H-D method, important historical roots of the legend in science education of a single, universal scientific method are the American philosopher and psychologist Dewey’s account of inquiry in How We Think (1910) and the British mathematician Karl Pearson’s account of science in Grammar of Science (1892). On Dewey’s account, inquiry is divided into the five steps of

(i) a felt difficulty, (ii) its location and definition, (iii) suggestion of a possible solution, (iv) development by reasoning of the bearing of the suggestions, (v) further observation and experiment leading to its acceptance or rejection. (Dewey 1910: 72)

Similarly, on Pearson’s account, scientific investigations start with measurement of data and observation of their correction and sequence from which scientific laws can be discovered with the aid of creative imagination. These laws have to be subject to criticism, and their final acceptance will have equal validity for “all normally constituted minds”. Both Dewey’s and Pearson’s accounts should be seen as generalized abstractions of inquiry and not restricted to the realm of science—although both Dewey and Pearson referred to their respective accounts as ‘the scientific method’.

Occasionally, scientists make sweeping statements about a simple and distinct scientific method, as exemplified by Feynman’s simplified version of a conjectures and refutations method presented, for example, in the last of his 1964 Cornell Messenger lectures. [ 6 ] However, just as often scientists have come to the same conclusion as recent philosophy of science that there is not any unique, easily described scientific method. For example, the physicist and Nobel Laureate Weinberg described in the paper “The Methods of Science … And Those By Which We Live” (1995) how

The fact that the standards of scientific success shift with time does not only make the philosophy of science difficult; it also raises problems for the public understanding of science. We do not have a fixed scientific method to rally around and defend. (1995: 8)

Interview studies with scientists on their conception of method shows that scientists often find it hard to figure out whether available evidence confirms their hypothesis, and that there are no direct translations between general ideas about method and specific strategies to guide how research is conducted (Schickore & Hangel 2019, Hangel & Schickore 2017)

Reference to the scientific method has also often been used to argue for the scientific nature or special status of a particular activity. Philosophical positions that argue for a simple and unique scientific method as a criterion of demarcation, such as Popperian falsification, have often attracted practitioners who felt that they had a need to defend their domain of practice. For example, references to conjectures and refutation as the scientific method are abundant in much of the literature on complementary and alternative medicine (CAM)—alongside the competing position that CAM, as an alternative to conventional biomedicine, needs to develop its own methodology different from that of science.

Also within mainstream science, reference to the scientific method is used in arguments regarding the internal hierarchy of disciplines and domains. A frequently seen argument is that research based on the H-D method is superior to research based on induction from observations because in deductive inferences the conclusion follows necessarily from the premises. (See, e.g., Parascandola 1998 for an analysis of how this argument has been made to downgrade epidemiology compared to the laboratory sciences.) Similarly, based on an examination of the practices of major funding institutions such as the National Institutes of Health (NIH), the National Science Foundation (NSF) and the Biomedical Sciences Research Practices (BBSRC) in the UK, O’Malley et al. (2009) have argued that funding agencies seem to have a tendency to adhere to the view that the primary activity of science is to test hypotheses, while descriptive and exploratory research is seen as merely preparatory activities that are valuable only insofar as they fuel hypothesis-driven research.

In some areas of science, scholarly publications are structured in a way that may convey the impression of a neat and linear process of inquiry from stating a question, devising the methods by which to answer it, collecting the data, to drawing a conclusion from the analysis of data. For example, the codified format of publications in most biomedical journals known as the IMRAD format (Introduction, Method, Results, Analysis, Discussion) is explicitly described by the journal editors as “not an arbitrary publication format but rather a direct reflection of the process of scientific discovery” (see the so-called “Vancouver Recommendations”, ICMJE 2013: 11). However, scientific publications do not in general reflect the process by which the reported scientific results were produced. For example, under the provocative title “Is the scientific paper a fraud?”, Medawar argued that scientific papers generally misrepresent how the results have been produced (Medawar 1963/1996). Similar views have been advanced by philosophers, historians and sociologists of science (Gilbert 1976; Holmes 1987; Knorr-Cetina 1981; Schickore 2008; Suppe 1998) who have argued that scientists’ experimental practices are messy and often do not follow any recognizable pattern. Publications of research results, they argue, are retrospective reconstructions of these activities that often do not preserve the temporal order or the logic of these activities, but are instead often constructed in order to screen off potential criticism (see Schickore 2008 for a review of this work).

Philosophical positions on the scientific method have also made it into the court room, especially in the US where judges have drawn on philosophy of science in deciding when to confer special status to scientific expert testimony. A key case is Daubert vs Merrell Dow Pharmaceuticals (92–102, 509 U.S. 579, 1993). In this case, the Supreme Court argued in its 1993 ruling that trial judges must ensure that expert testimony is reliable, and that in doing this the court must look at the expert’s methodology to determine whether the proffered evidence is actually scientific knowledge. Further, referring to works of Popper and Hempel the court stated that

ordinarily, a key question to be answered in determining whether a theory or technique is scientific knowledge … is whether it can be (and has been) tested. (Justice Blackmun, Daubert v. Merrell Dow Pharmaceuticals; see Other Internet Resources for a link to the opinion)

But as argued by Haack (2005a,b, 2010) and by Foster & Hubner (1999), by equating the question of whether a piece of testimony is reliable with the question whether it is scientific as indicated by a special methodology, the court was producing an inconsistent mixture of Popper’s and Hempel’s philosophies, and this has later led to considerable confusion in subsequent case rulings that drew on the Daubert case (see Haack 2010 for a detailed exposition).

The difficulties around identifying the methods of science are also reflected in the difficulties of identifying scientific misconduct in the form of improper application of the method or methods of science. One of the first and most influential attempts at defining misconduct in science was the US definition from 1989 that defined misconduct as

fabrication, falsification, plagiarism, or other practices that seriously deviate from those that are commonly accepted within the scientific community . (Code of Federal Regulations, part 50, subpart A., August 8, 1989, italics added)

However, the “other practices that seriously deviate” clause was heavily criticized because it could be used to suppress creative or novel science. For example, the National Academy of Science stated in their report Responsible Science (1992) that it

wishes to discourage the possibility that a misconduct complaint could be lodged against scientists based solely on their use of novel or unorthodox research methods. (NAS: 27)

This clause was therefore later removed from the definition. For an entry into the key philosophical literature on conduct in science, see Shamoo & Resnick (2009).

The question of the source of the success of science has been at the core of philosophy since the beginning of modern science. If viewed as a matter of epistemology more generally, scientific method is a part of the entire history of philosophy. Over that time, science and whatever methods its practitioners may employ have changed dramatically. Today, many philosophers have taken up the banners of pluralism or of practice to focus on what are, in effect, fine-grained and contextually limited examinations of scientific method. Others hope to shift perspectives in order to provide a renewed general account of what characterizes the activity we call science.

One such perspective has been offered recently by Hoyningen-Huene (2008, 2013), who argues from the history of philosophy of science that after three lengthy phases of characterizing science by its method, we are now in a phase where the belief in the existence of a positive scientific method has eroded and what has been left to characterize science is only its fallibility. First was a phase from Plato and Aristotle up until the 17 th century where the specificity of scientific knowledge was seen in its absolute certainty established by proof from evident axioms; next was a phase up to the mid-19 th century in which the means to establish the certainty of scientific knowledge had been generalized to include inductive procedures as well. In the third phase, which lasted until the last decades of the 20 th century, it was recognized that empirical knowledge was fallible, but it was still granted a special status due to its distinctive mode of production. But now in the fourth phase, according to Hoyningen-Huene, historical and philosophical studies have shown how “scientific methods with the characteristics as posited in the second and third phase do not exist” (2008: 168) and there is no longer any consensus among philosophers and historians of science about the nature of science. For Hoyningen-Huene, this is too negative a stance, and he therefore urges the question about the nature of science anew. His own answer to this question is that “scientific knowledge differs from other kinds of knowledge, especially everyday knowledge, primarily by being more systematic” (Hoyningen-Huene 2013: 14). Systematicity can have several different dimensions: among them are more systematic descriptions, explanations, predictions, defense of knowledge claims, epistemic connectedness, ideal of completeness, knowledge generation, representation of knowledge and critical discourse. Hence, what characterizes science is the greater care in excluding possible alternative explanations, the more detailed elaboration with respect to data on which predictions are based, the greater care in detecting and eliminating sources of error, the more articulate connections to other pieces of knowledge, etc. On this position, what characterizes science is not that the methods employed are unique to science, but that the methods are more carefully employed.

Another, similar approach has been offered by Haack (2003). She sets off, similar to Hoyningen-Huene, from a dissatisfaction with the recent clash between what she calls Old Deferentialism and New Cynicism. The Old Deferentialist position is that science progressed inductively by accumulating true theories confirmed by empirical evidence or deductively by testing conjectures against basic statements; while the New Cynics position is that science has no epistemic authority and no uniquely rational method and is merely just politics. Haack insists that contrary to the views of the New Cynics, there are objective epistemic standards, and there is something epistemologically special about science, even though the Old Deferentialists pictured this in a wrong way. Instead, she offers a new Critical Commonsensist account on which standards of good, strong, supportive evidence and well-conducted, honest, thorough and imaginative inquiry are not exclusive to the sciences, but the standards by which we judge all inquirers. In this sense, science does not differ in kind from other kinds of inquiry, but it may differ in the degree to which it requires broad and detailed background knowledge and a familiarity with a technical vocabulary that only specialists may possess.

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Scientific Method: Role and Importance Essay

The scientific method is a problem-solving strategy that is at the heart of biology and other sciences. There are five steps included in the scientific method that is making an observation, asking a question, forming a hypothesis or an explanation that could be tested, and predicting the test. After that, in the feedback step that is iterating, the results are used to make new predictions. The scientific method is almost always an iterative process. In other words, rather than a straight line, it is a cycle. The outcome of one round of questioning generates feedback that helps to enhance the next round of questioning.

Science is an activity that involves the logical explanation, prediction, and control of empirical phenomena. The concepts of reasoning applicable to the pursuit of this endeavor are referred to as scientific reasoning (Cowles, 2020). They include topics such as experimental design, hypothesis testing, and data interpretation. All sciences, including social sciences, follow the scientific method (Cowles, 2020). Different questions and tests are asked and performed by scientists in various domains. They do, however, have a common approach to finding logical and evidence-based answers.

Scientific reasoning is fundamental for all types of scientific study, not simply institutional research. Scientists do employ specific ideas that non-scientists do not have to use in everyday life. However, many reasoning principles are useful in everyday life. Even if one is not a scientist, they must use excellent reasoning to understand, anticipate, and regulate the events that occur in the environment. When one wants to start their careers, preserve their finances, or enhance their health, they need to acquire evidence to determine the most effective method for achieving our goals. Good scientific thinking skills come in handy in all of these situations.

Experiments, surveys, case studies, descriptive studies, and non-descriptive studies are all forms of research used in the scientific method. In an experiment, a researcher manipulates certain factors in a controlled environment and assesses their impact on other variables (Black, 2018). Descriptive research focuses on the nature of the relationship between the variables being studied rather than on cause and effect. A case study is a detailed examination of a single instance in which something unexpected has occurred. This is normally done with a single individual in extreme or exceptional instances. Large groups of individuals are polled to answer questions about certain topics in surveys. Correlational approaches are used in non-descriptive investigations to anticipate the link between two or more variables.

The Lau and Chan technique describes how to assess the validity of a theory or hypothesis using the scientific method, also known as the hypothetical-deductive method (Lau & Chan, 2017). For testing theories or hypotheses, the hypothetical-deductive technique (HD method) is highly useful. It is sometimes referred to as “scientific procedure.” This is not quite right because science can’t possibly employ only one approach. However, the HD technique is critical since it is one of the most fundamental approaches used in many scientific disciplines, including economics, physics, and biochemistry. Its implementation can be broken down into four stages. The stages include using the hypothetical-deductive method, identifying the testable hypothesis, generating the predictions according to the hypothesis, and using experiments in order to check the predictions (Cowles, 2020). If the predictions that are tested turn out to be correct, the hypothesis will be confirmed. Suppose the results are incorrect; the hypothesis would be disconfirmed.

The HD method instructs us on how to test a hypothesis, and each scientific theory must be testable.

One cannot discover evidence to illustrate whether a theory is likely or not if it cannot be tested. It cannot be considered scientific information in that circumstance. Consider the possibility that there are ghosts that people cannot see, cannot communicate with, and cannot be detected directly or indirectly. This hypothesis is defined in such a way that testing is not possible. It could still be real, and there could be such ghosts, but people would never know; thus, this cannot be considered a scientific hypothesis. In general, validating a theory’s predictions raises the likelihood that it is right. However, this does not establish definitively that the theory is right in and of itself. When given additional assumptions, a hypothesis frequently creates a prediction. When a forecast fails in this way, the theory may still be valid.

When a theory makes a faulty prediction, it might be difficult to determine whether the theory should be rejected or whether the auxiliary assumptions are flawed. Astronomers in the 19th century, for example, discovered that Newtonian physics could not adequately explain the orbit of the planet Mercury. This is due to the fact that Newtonian physics is incorrect, and you require relativity to get a more accurate orbit prediction. When astronomers discovered Uranus in 1781, they discovered that its orbit did not match Newtonian physics predictions. However, astronomers concluded that it could be explained if Uranus was being affected by another planet, and Neptune was discovered as a result.

I had several instances where I have made assumptions on an important issue regardless of evidence. Once I have prepared the work on the topic of power distribution in the workplace and its relation to gender, I have assumed that possibly because of the general feminine traits, women are less likely to create a strong image of power in comparison with men. In fact, such a hypothesis needs to be tested, and it is testable. For example, I could first define what is meant by feminine traits by collecting data from different biological and psychological sources. After that, I could observe the information regarding what factors or behavior patterns contribute to establishing power in the workplace. If I found the correlation between the feminine character traits, communication style, and behavioral patterns with the distribution of power in the workplace, then I could confirm my hypothesis.

Thus, applying the scientific method can help to improve critical reasoning by using tools from scientific reasoning. By supporting the provided hypothesis with evidence from scientific research and statistical data, one can make their claim more valuable and objective. The scientific method is essential for the creation of scientific theories that explain information and ideas in a scientifically rational manner. In a typical scientific method application, a researcher makes a hypothesis, tests it using various methods, and then alters it based on the results of the tests and experiments. The new hypothesis is then retested, further changed, and retested until it matches observable events and testing results. Hypotheses serve as tools for scientists to collect data in this way. Scientists can build broad general explanations, or scientific theories, based on that evidence and the numerous scientific experiments conducted to investigate possibilities. In conclusion, a scientific method is an important approach to examining the hypothesis. By using the tools of the scientific method, the inferences become rational and objective.

Black, M. (2018). Critical thinking: An introduction to logic and scientific method . Pickle Partners Publishing.

Cowles, H. M. (2020). The Scientific Method . Harvard University Press.

Lau, J., & Chan, J. (2017). Scientific methodology: Tutorials 1-9 .

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Scientific Method

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The scientific method is a series of steps followed by scientific investigators to answer specific questions about the natural world. It involves making observations, formulating a hypothesis , and conducting scientific experiments . Scientific inquiry starts with an observation followed by the formulation of a question about what has been observed. The steps of the scientific method are as follows:

Observation

The first step of the scientific method involves making an observation about something that interests you. This is very important if you are doing a science project because you want your project to be focused on something that will hold your attention. Your observation can be on anything from plant movement to animal behavior, as long as it is something you really want to know more about.​ This is where you come up with the idea for your science project.

Once you've made your observation, you must formulate a question about what you have observed. Your question should tell what it is that you are trying to discover or accomplish in your experiment. When stating your question you should be as specific as possible.​ For example, if you are doing a project on plants , you may want to know how plants interact with microbes. Your question may be: Do plant spices inhibit bacterial growth ?

The hypothesis is a key component of the scientific process. A hypothesis is an idea that is suggested as an explanation for a natural event, a particular experience, or a specific condition that can be tested through definable experimentation. It states the purpose of your experiment, the variables used, and the predicted outcome of your experiment. It is important to note that a hypothesis must be testable. That means that you should be able to test your hypothesis through experimentation .​ Your hypothesis must either be supported or falsified by your experiment. An example of a good hypothesis is: If there is a relation between listening to music and heart rate, then listening to music will cause a person's resting heart rate to either increase or decrease.

Once you've developed a hypothesis, you must design and conduct an experiment that will test it. You should develop a procedure that states very clearly how you plan to conduct your experiment. It is important that you include and identify a controlled variable or dependent variable in your procedure. Controls allow us to test a single variable in an experiment because they are unchanged. We can then make observations and comparisons between our controls and our independent variables (things that change in the experiment) to develop an accurate conclusion.​

The results are where you report what happened in the experiment. That includes detailing all observations and data made during your experiment. Most people find it easier to visualize the data by charting or graphing the information.​

The final step of the scientific method is developing a conclusion. This is where all of the results from the experiment are analyzed and a determination is reached about the hypothesis. Did the experiment support or reject your hypothesis? If your hypothesis was supported, great. If not, repeat the experiment or think of ways to improve your procedure.

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What is the Scientific Method: How does it work and why is it important?

The scientific method is a systematic process involving steps like defining questions, forming hypotheses, conducting experiments, and analyzing data. It minimizes biases and enables replicable research, leading to groundbreaking discoveries like Einstein's theory of relativity, penicillin, and the structure of DNA. This ongoing approach promotes reason, evidence, and the pursuit of truth in science.

Updated on November 18, 2023

Beginning in elementary school, we are exposed to the scientific method and taught how to put it into practice. As a tool for learning, it prepares children to think logically and use reasoning when seeking answers to questions.

Rather than jumping to conclusions, the scientific method gives us a recipe for exploring the world through observation and trial and error. We use it regularly, sometimes knowingly in academics or research, and sometimes subconsciously in our daily lives.

In this article we will refresh our memories on the particulars of the scientific method, discussing where it comes from, which elements comprise it, and how it is put into practice. Then, we will consider the importance of the scientific method, who uses it and under what circumstances.

What is the scientific method?

The scientific method is a dynamic process that involves objectively investigating questions through observation and experimentation . Applicable to all scientific disciplines, this systematic approach to answering questions is more accurately described as a flexible set of principles than as a fixed series of steps.

The following representations of the scientific method illustrate how it can be both condensed into broad categories and also expanded to reveal more and more details of the process. These graphics capture the adaptability that makes this concept universally valuable as it is relevant and accessible not only across age groups and educational levels but also within various contexts.

Steps in the scientific method

While the scientific method is versatile in form and function, it encompasses a collection of principles that create a logical progression to the process of problem solving:

• Define a question : Constructing a clear and precise problem statement that identifies the main question or goal of the investigation is the first step. The wording must lend itself to experimentation by posing a question that is both testable and measurable.
• Gather information and resources : Researching the topic in question to find out what is already known and what types of related questions others are asking is the next step in this process. This background information is vital to gaining a full understanding of the subject and in determining the best design for experiments. 
• Form a hypothesis : Composing a concise statement that identifies specific variables and potential results, which can then be tested, is a crucial step that must be completed before any experimentation. An imperfection in the composition of a hypothesis can result in weaknesses to the entire design of an experiment.
• Perform the experiments : Testing the hypothesis by performing replicable experiments and collecting resultant data is another fundamental step of the scientific method. By controlling some elements of an experiment while purposely manipulating others, cause and effect relationships are established.
• Analyze the data : Interpreting the experimental process and results by recognizing trends in the data is a necessary step for comprehending its meaning and supporting the conclusions. Drawing inferences through this systematic process lends substantive evidence for either supporting or rejecting the hypothesis.
• Report the results : Sharing the outcomes of an experiment, through an essay, presentation, graphic, or journal article, is often regarded as a final step in this process. Detailing the project's design, methods, and results not only promotes transparency and replicability but also adds to the body of knowledge for future research.
• Retest the hypothesis : Repeating experiments to see if a hypothesis holds up in all cases is a step that is manifested through varying scenarios. Sometimes a researcher immediately checks their own work or replicates it at a future time, or another researcher will repeat the experiments to further test the hypothesis.

Where did the scientific method come from?

Oftentimes, ancient peoples attempted to answer questions about the unknown by:

• Making simple observations
• Discussing the possibilities with others deemed worthy of a debate
• Drawing conclusions based on dominant opinions and preexisting beliefs

For example, take Greek and Roman mythology. Myths were used to explain everything from the seasons and stars to the sun and death itself.

However, as societies began to grow through advancements in agriculture and language, ancient civilizations like Egypt and Babylonia shifted to a more rational analysis for understanding the natural world. They increasingly employed empirical methods of observation and experimentation that would one day evolve into the scientific method . 

In the 4th century, Aristotle, considered the Father of Science by many, suggested these elements , which closely resemble the contemporary scientific method, as part of his approach for conducting science:

• Study what others have written about the subject.
• Look for the general consensus about the subject.
• Perform a systematic study of everything even partially related to the topic.

By continuing to emphasize systematic observation and controlled experiments, scholars such as Al-Kindi and Ibn al-Haytham helped expand this concept throughout the Islamic Golden Age . 

In his 1620 treatise, Novum Organum , Sir Francis Bacon codified the scientific method, arguing not only that hypotheses must be tested through experiments but also that the results must be replicated to establish a truth. Coming at the height of the Scientific Revolution, this text made the scientific method accessible to European thinkers like Galileo and Isaac Newton who then put the method into practice.

As science modernized in the 19th century, the scientific method became more formalized, leading to significant breakthroughs in fields such as evolution and germ theory. Today, it continues to evolve, underpinning scientific progress in diverse areas like quantum mechanics, genetics, and artificial intelligence.

Why is the scientific method important?

The history of the scientific method illustrates how the concept developed out of a need to find objective answers to scientific questions by overcoming biases based on fear, religion, power, and cultural norms. This still holds true today.

By implementing this standardized approach to conducting experiments, the impacts of researchers’ personal opinions and preconceived notions are minimized. The organized manner of the scientific method prevents these and other mistakes while promoting the replicability and transparency necessary for solid scientific research.

The importance of the scientific method is best observed through its successes, for example: 

• “ Albert Einstein stands out among modern physicists as the scientist who not only formulated a theory of revolutionary significance but also had the genius to reflect in a conscious and technical way on the scientific method he was using.” Devising a hypothesis based on the prevailing understanding of Newtonian physics eventually led Einstein to devise the theory of general relativity .
• Howard Florey “Perhaps the most useful lesson which has come out of the work on penicillin has been the demonstration that success in this field depends on the development and coordinated use of technical methods.” After discovering a mold that prevented the growth of Staphylococcus bacteria, Dr. Alexander Flemimg designed experiments to identify and reproduce it in the lab, thus leading to the development of penicillin .
• James D. Watson “Every time you understand something, religion becomes less likely. Only with the discovery of the double helix and the ensuing genetic revolution have we had grounds for thinking that the powers held traditionally to be the exclusive property of the gods might one day be ours. . . .” By using wire models to conceive a structure for DNA, Watson and Crick crafted a hypothesis for testing combinations of amino acids, X-ray diffraction images, and the current research in atomic physics, resulting in the discovery of DNA’s double helix structure .

Final thoughts

As the cases exemplify, the scientific method is never truly completed, but rather started and restarted. It gave these researchers a structured process that was easily replicated, modified, and built upon. 

While the scientific method may “end” in one context, it never literally ends. When a hypothesis, design, methods, and experiments are revisited, the scientific method simply picks up where it left off. Each time a researcher builds upon previous knowledge, the scientific method is restored with the pieces of past efforts.

By guiding researchers towards objective results based on transparency and reproducibility, the scientific method acts as a defense against bias, superstition, and preconceived notions. As we embrace the scientific method's enduring principles, we ensure that our quest for knowledge remains firmly rooted in reason, evidence, and the pursuit of truth.

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Sat / act prep online guides and tips, the 6 scientific method steps and how to use them.

General Education

When you’re faced with a scientific problem, solving it can seem like an impossible prospect. There are so many possible explanations for everything we see and experience—how can you possibly make sense of them all? Science has a simple answer: the scientific method.

The scientific method is a method of asking and answering questions about the world. These guiding principles give scientists a model to work through when trying to understand the world, but where did that model come from, and how does it work?

In this article, we’ll define the scientific method, discuss its long history, and cover each of the scientific method steps in detail.

What Is the Scientific Method?

At its most basic, the scientific method is a procedure for conducting scientific experiments. It’s a set model that scientists in a variety of fields can follow, going from initial observation to conclusion in a loose but concrete format.

The number of steps varies, but the process begins with an observation, progresses through an experiment, and concludes with analysis and sharing data. One of the most important pieces to the scientific method is skepticism —the goal is to find truth, not to confirm a particular thought. That requires reevaluation and repeated experimentation, as well as examining your thinking through rigorous study.

There are in fact multiple scientific methods, as the basic structure can be easily modified.  The one we typically learn about in school is the basic method, based in logic and problem solving, typically used in “hard” science fields like biology, chemistry, and physics. It may vary in other fields, such as psychology, but the basic premise of making observations, testing, and continuing to improve a theory from the results remain the same.

The History of the Scientific Method

The scientific method as we know it today is based on thousands of years of scientific study. Its development goes all the way back to ancient Mesopotamia, Greece, and India.

The Ancient World

In ancient Greece, Aristotle devised an inductive-deductive process , which weighs broad generalizations from data against conclusions reached by narrowing down possibilities from a general statement. However, he favored deductive reasoning, as it identifies causes, which he saw as more important.

Aristotle wrote a great deal about logic and many of his ideas about reasoning echo those found in the modern scientific method, such as ignoring circular evidence and limiting the number of middle terms between the beginning of an experiment and the end. Though his model isn’t the one that we use today, the reliance on logic and thorough testing are still key parts of science today.

The Middle Ages

The next big step toward the development of the modern scientific method came in the Middle Ages, particularly in the Islamic world. Ibn al-Haytham, a physicist from what we now know as Iraq, developed a method of testing, observing, and deducing for his research on vision. al-Haytham was critical of Aristotle’s lack of inductive reasoning, which played an important role in his own research.

Other scientists, including Abū Rayhān al-Bīrūnī, Ibn Sina, and Robert Grosseteste also developed models of scientific reasoning to test their own theories. Though they frequently disagreed with one another and Aristotle, those disagreements and refinements of their methods led to the scientific method we have today.

Following those major developments, particularly Grosseteste’s work, Roger Bacon developed his own cycle of observation (seeing that something occurs), hypothesis (making a guess about why that thing occurs), experimentation (testing that the thing occurs), and verification (an outside person ensuring that the result of the experiment is consistent).

After joining the Franciscan Order, Bacon was granted a special commission to write about science; typically, Friars were not allowed to write books or pamphlets. With this commission, Bacon outlined important tenets of the scientific method, including causes of error, methods of knowledge, and the differences between speculative and experimental science. He also used his own principles to investigate the causes of a rainbow, demonstrating the method’s effectiveness.

Scientific Revolution

Throughout the Renaissance, more great thinkers became involved in devising a thorough, rigorous method of scientific study. Francis Bacon brought inductive reasoning further into the method, whereas Descartes argued that the laws of the universe meant that deductive reasoning was sufficient. Galileo’s research was also inductive reasoning-heavy, as he believed that researchers could not account for every possible variable; therefore, repetition was necessary to eliminate faulty hypotheses and experiments.

All of this led to the birth of the Scientific Revolution , which took place during the sixteenth and seventeenth centuries. In 1660, a group of philosophers and physicians joined together to work on scientific advancement. After approval from England’s crown , the group became known as the Royal Society, which helped create a thriving scientific community and an early academic journal to help introduce rigorous study and peer review.

Previous generations of scientists had touched on the importance of induction and deduction, but Sir Isaac Newton proposed that both were equally important. This contribution helped establish the importance of multiple kinds of reasoning, leading to more rigorous study.

As science began to splinter into separate areas of study, it became necessary to define different methods for different fields. Karl Popper was a leader in this area—he established that science could be subject to error, sometimes intentionally. This was particularly tricky for “soft” sciences like psychology and social sciences, which require different methods. Popper’s theories furthered the divide between sciences like psychology and “hard” sciences like chemistry or physics.

Paul Feyerabend argued that Popper’s methods were too restrictive for certain fields, and followed a less restrictive method hinged on “anything goes,” as great scientists had made discoveries without the Scientific Method. Feyerabend suggested that throughout history scientists had adapted their methods as necessary, and that sometimes it would be necessary to break the rules. This approach suited social and behavioral scientists particularly well, leading to a more diverse range of models for scientists in multiple fields to use.

The Scientific Method Steps

Though different fields may have variations on the model, the basic scientific method is as follows:

#1: Make Observations 

Notice something, such as the air temperature during the winter, what happens when ice cream melts, or how your plants behave when you forget to water them.

#2: Ask a Question

Turn your observation into a question. Why is the temperature lower during the winter? Why does my ice cream melt? Why does my toast always fall butter-side down?

This step can also include doing some research. You may be able to find answers to these questions already, but you can still test them!

#3: Make a Hypothesis

A hypothesis is an educated guess of the answer to your question. Why does your toast always fall butter-side down? Maybe it’s because the butter makes that side of the bread heavier.

A good hypothesis leads to a prediction that you can test, phrased as an if/then statement. In this case, we can pick something like, “If toast is buttered, then it will hit the ground butter-first.”

#4: Experiment

Your experiment is designed to test whether your predication about what will happen is true. A good experiment will test one variable at a time —for example, we’re trying to test whether butter weighs down one side of toast, making it more likely to hit the ground first.

The unbuttered toast is our control variable. If we determine the chance that a slice of unbuttered toast, marked with a dot, will hit the ground on a particular side, we can compare those results to our buttered toast to see if there’s a correlation between the presence of butter and which way the toast falls.

If we decided not to toast the bread, that would be introducing a new question—whether or not toasting the bread has any impact on how it falls. Since that’s not part of our test, we’ll stick with determining whether the presence of butter has any impact on which side hits the ground first.

#5: Analyze Data

After our experiment, we discover that both buttered toast and unbuttered toast have a 50/50 chance of hitting the ground on the buttered or marked side when dropped from a consistent height, straight down. It looks like our hypothesis was incorrect—it’s not the butter that makes the toast hit the ground in a particular way, so it must be something else.

Since we didn’t get the desired result, it’s back to the drawing board. Our hypothesis wasn’t correct, so we’ll need to start fresh. Now that you think about it, your toast seems to hit the ground butter-first when it slides off your plate, not when you drop it from a consistent height. That can be the basis for your new experiment.

#6: Communicate Your Results

Good science needs verification. Your experiment should be replicable by other people, so you can put together a report about how you ran your experiment to see if other peoples’ findings are consistent with yours.

This may be useful for class or a science fair. Professional scientists may publish their findings in scientific journals, where other scientists can read and attempt their own versions of the same experiments. Being part of a scientific community helps your experiments be stronger because other people can see if there are flaws in your approach—such as if you tested with different kinds of bread, or sometimes used peanut butter instead of butter—that can lead you closer to a good answer.

A Scientific Method Example: Falling Toast

We’ve run through a quick recap of the scientific method steps, but let’s look a little deeper by trying again to figure out why toast so often falls butter side down.

#1: Make Observations

At the end of our last experiment, where we learned that butter doesn’t actually make toast more likely to hit the ground on that side, we remembered that the times when our toast hits the ground butter side first are usually when it’s falling off a plate.

The easiest question we can ask is, “Why is that?”

We can actually search this online and find a pretty detailed answer as to why this is true. But we’re budding scientists—we want to see it in action and verify it for ourselves! After all, good science should be replicable, and we have all the tools we need to test out what’s really going on.

Why do we think that buttered toast hits the ground butter-first? We know it’s not because it’s heavier, so we can strike that out. Maybe it’s because of the shape of our plate?

That’s something we can test. We’ll phrase our hypothesis as, “If my toast slides off my plate, then it will fall butter-side down.”

Just seeing that toast falls off a plate butter-side down isn’t enough for us. We want to know why, so we’re going to take things a step further—we’ll set up a slow-motion camera to capture what happens as the toast slides off the plate.

We’ll run the test ten times, each time tilting the same plate until the toast slides off. We’ll make note of each time the butter side lands first and see what’s happening on the video so we can see what’s going on.

When we review the footage, we’ll likely notice that the bread starts to flip when it slides off the edge, changing how it falls in a way that didn’t happen when we dropped it ourselves.

That answers our question, but it’s not the complete picture —how do other plates affect how often toast hits the ground butter-first? What if the toast is already butter-side down when it falls? These are things we can test in further experiments with new hypotheses!

Now that we have results, we can share them with others who can verify our results. As mentioned above, being part of the scientific community can lead to better results. If your results were wildly different from the established thinking about buttered toast, that might be cause for reevaluation. If they’re the same, they might lead others to make new discoveries about buttered toast. At the very least, you have a cool experiment you can share with your friends!

Key Scientific Method Tips

Though science can be complex, the benefit of the scientific method is that it gives you an easy-to-follow means of thinking about why and how things happen. To use it effectively, keep these things in mind!

Don’t Worry About Proving Your Hypothesis

One of the important things to remember about the scientific method is that it’s not necessarily meant to prove your hypothesis right. It’s great if you do manage to guess the reason for something right the first time, but the ultimate goal of an experiment is to find the true reason for your observation to occur, not to prove your hypothesis right.

Good science sometimes means that you’re wrong. That’s not a bad thing—a well-designed experiment with an unanticipated result can be just as revealing, if not more, than an experiment that confirms your hypothesis.

Be Prepared to Try Again

If the data from your experiment doesn’t match your hypothesis, that’s not a bad thing. You’ve eliminated one possible explanation, which brings you one step closer to discovering the truth.

The scientific method isn’t something you’re meant to do exactly once to prove a point. It’s meant to be repeated and adapted to bring you closer to a solution. Even if you can demonstrate truth in your hypothesis, a good scientist will run an experiment again to be sure that the results are replicable. You can even tweak a successful hypothesis to test another factor, such as if we redid our buttered toast experiment to find out whether different kinds of plates affect whether or not the toast falls butter-first. The more we test our hypothesis, the stronger it becomes!

What’s Next?

Want to learn more about the scientific method? These important high school science classes will no doubt cover it in a variety of different contexts.

Test your ability to follow the scientific method using these at-home science experiments for kids !

Need some proof that science is fun? Try making slime

Melissa Brinks graduated from the University of Washington in 2014 with a Bachelor's in English with a creative writing emphasis. She has spent several years tutoring K-12 students in many subjects, including in SAT prep, to help them prepare for their college education.

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The Significant Research Experience Essay

• First Online: 23 September 2020

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• Jonathan Sussman 4 ,
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One of the most unique and substantial parts of the MD/PhD application is the significant research experience essay, which is a part of the primary AMCAS application. In this essay, applicants describe their research positions, projects, and accomplishments in detail. This chapter explains how to structure and write this essay in terms of the scientific method. It is important for applicants to demonstrate involvement in every step of the scientific process, from designing the experiments to communicating the results. However, this essay serves as an excellent medium through which applicants can explain how their research interests have evolved over time and the most important lessons they learned through research. In effect, this essay can be viewed as a technical-based personal statement.

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Perspective: Dimensions of the scientific method

Eberhard o. voit.

Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America

The scientific method has been guiding biological research for a long time. It not only prescribes the order and types of activities that give a scientific study validity and a stamp of approval but also has substantially shaped how we collectively think about the endeavor of investigating nature. The advent of high-throughput data generation, data mining, and advanced computational modeling has thrown the formerly undisputed, monolithic status of the scientific method into turmoil. On the one hand, the new approaches are clearly successful and expect the same acceptance as the traditional methods, but on the other hand, they replace much of the hypothesis-driven reasoning with inductive argumentation, which philosophers of science consider problematic. Intrigued by the enormous wealth of data and the power of machine learning, some scientists have even argued that significant correlations within datasets could make the entire quest for causation obsolete. Many of these issues have been passionately debated during the past two decades, often with scant agreement. It is proffered here that hypothesis-driven, data-mining–inspired, and “allochthonous” knowledge acquisition, based on mathematical and computational models, are vectors spanning a 3D space of an expanded scientific method. The combination of methods within this space will most certainly shape our thinking about nature, with implications for experimental design, peer review and funding, sharing of result, education, medical diagnostics, and even questions of litigation.

The traditional scientific method: Hypothesis-driven deduction

Research is the undisputed core activity defining science. Without research, the advancement of scientific knowledge would come to a screeching halt. While it is evident that researchers look for new information or insights, the term “research” is somewhat puzzling. Never mind the prefix “re,” which simply means “coming back and doing it again and again,” the word “search” seems to suggest that the research process is somewhat haphazard, that not much of a strategy is involved in the process. One might argue that research a few hundred years ago had the character of hoping for enough luck to find something new. The alchemists come to mind in their quest to turn mercury or lead into gold, or to discover an elixir for eternal youth, through methods we nowadays consider laughable.

Today’s sciences, in stark contrast, are clearly different. Yes, we still try to find something new—and may need a good dose of luck—but the process is anything but unstructured. In fact, it is prescribed in such rigor that it has been given the widely known moniker “scientific method.” This scientific method has deep roots going back to Aristotle and Herophilus (approximately 300 BC), Avicenna and Alhazen (approximately 1,000 AD), Grosseteste and Robert Bacon (approximately 1,250 AD), and many others, but solidified and crystallized into the gold standard of quality research during the 17th and 18th centuries [ 1 – 7 ]. In particular, Sir Francis Bacon (1561–1626) and René Descartes (1596–1650) are often considered the founders of the scientific method, because they insisted on careful, systematic observations of high quality, rather than metaphysical speculations that were en vogue among the scholars of the time [ 1 , 8 ]. In contrast to their peers, they strove for objectivity and insisted that observations, rather than an investigator’s preconceived ideas or superstitions, should be the basis for formulating a research idea [ 7 , 9 ].

Bacon and his 19th century follower John Stuart Mill explicitly proposed gaining knowledge through inductive reasoning: Based on carefully recorded observations, or from data obtained in a well-planned experiment, generalized assertions were to be made about similar yet (so far) unobserved phenomena [ 7 ]. Expressed differently, inductive reasoning attempts to derive general principles or laws directly from empirical evidence [ 10 ]. An example is the 19th century epigram of the physician Rudolf Virchow, Omnis cellula e cellula . There is no proof that indeed “every cell derives from a cell,” but like Virchow, we have made the observation time and again and never encountered anything suggesting otherwise.

In contrast to induction, the widely accepted, traditional scientific method is based on formulating and testing hypotheses. From the results of these tests, a deduction is made whether the hypothesis is presumably true or false. This type of hypotheticodeductive reasoning goes back to William Whewell, William Stanley Jevons, and Charles Peirce in the 19th century [ 1 ]. By the 20th century, the deductive, hypothesis-based scientific method had become deeply ingrained in the scientific psyche, and it is now taught as early as middle school in order to teach students valid means of discovery [ 8 , 11 , 12 ]. The scientific method has not only guided most research studies but also fundamentally influenced how we think about the process of scientific discovery.

Alas, because biology has almost no general laws, deduction in the strictest sense is difficult. It may therefore be preferable to use the term abduction, which refers to the logical inference toward the most plausible explanation, given a set of observations, although this explanation cannot be proven and is not necessarily true.

Over the decades, the hypothesis-based scientific method did experience variations here and there, but its conceptual scaffold remained essentially unchanged ( Fig 1 ). Its key is a process that begins with the formulation of a hypothesis that is to be rigorously tested, either in the wet lab or computationally; nonadherence to this principle is seen as lacking rigor and can lead to irreproducible results [ 1 , 13 – 15 ].

The central concept of the traditional scientific method is a falsifiable hypothesis regarding some phenomenon of interest. This hypothesis is to be tested experimentally or computationally. The test results support or refute the hypothesis, triggering a new round of hypothesis formulation and testing.

Going further, the prominent philosopher of science Sir Karl Popper argued that a scientific hypothesis can never be verified but that it can be disproved by a single counterexample. He therefore demanded that scientific hypotheses had to be falsifiable, because otherwise, testing would be moot [ 16 , 17 ] (see also [ 18 ]). As Gillies put it, “successful theories are those that survive elimination through falsification” [ 19 ]. Kelley and Scott agreed to some degree but warned that complete insistence on falsifiability is too restrictive as it would mark many computational techniques, statistical hypothesis testing, and even Darwin’s theory of evolution as nonscientific [ 20 ].

While the hypothesis-based scientific method has been very successful, its exclusive reliance on deductive reasoning is dangerous because according to the so-called Duhem–Quine thesis, hypothesis testing always involves an unknown number of explicit or implicit assumptions, some of which may steer the researcher away from hypotheses that seem implausible, although they are, in fact, true [ 21 ]. According to Kuhn, this bias can obstruct the recognition of paradigm shifts [ 22 ], which require the rethinking of previously accepted “truths” and the development of radically new ideas [ 23 , 24 ]. The testing of simultaneous alternative hypotheses [ 25 – 27 ] ameliorates this problem to some degree but not entirely.

The traditional scientific method is often presented in discrete steps, but it should really be seen as a form of critical thinking, subject to review and independent validation [ 8 ]. It has proven very influential, not only by prescribing valid experimentation, but also for affecting the way we attempt to understand nature [ 18 ], for teaching [ 8 , 12 ], reporting, publishing, and otherwise sharing information [ 28 ], for peer review and the awarding of funds by research-supporting agencies [ 29 , 30 ], for medical diagnostics [ 7 ], and even in litigation [ 31 ].

A second dimension of the scientific method: Data-mining–inspired induction

A major shift in biological experimentation occurred with the–omics revolution of the early 21st century. All of a sudden, it became feasible to perform high-throughput experiments that generated thousands of measurements, typically characterizing the expression or abundances of very many—if not all—genes, proteins, metabolites, or other biological quantities in a sample.

The strategy of measuring large numbers of items in a nontargeted fashion is fundamentally different from the traditional scientific method and constitutes a new, second dimension of the scientific method. Instead of hypothesizing and testing whether gene X is up-regulated under some altered condition, the leading question becomes which of the thousands of genes in a sample are up- or down-regulated. This shift in focus elevates the data to the supreme role of revealing novel insights by themselves ( Fig 2 ). As an important, generic advantage over the traditional strategy, this second dimension is free of a researcher’s preconceived notions regarding the molecular mechanisms governing the phenomenon of interest, which are otherwise the key to formulating a hypothesis. The prominent biologists Patrick Brown and David Botstein commented that “the patterns of expression will often suffice to begin de novo discovery of potential gene functions” [ 32 ].

Data-driven research begins with an untargeted exploration, in which the data speak for themselves. Machine learning extracts patterns from the data, which suggest hypotheses that are to be tested in the lab or computationally.

This data-driven, discovery-generating approach is at once appealing and challenging. On the one hand, very many data are explored simultaneously and essentially without bias. On the other hand, the large datasets supporting this approach create a genuine challenge to understanding and interpreting the experimental results because the thousands of data points, often superimposed with a fair amount of noise, make it difficult to detect meaningful differences between sample and control. This situation can only be addressed with computational methods that first “clean” the data, for instance, through the statistically valid removal of outliers, and then use machine learning to identify statistically significant, distinguishing molecular profiles or signatures. In favorable cases, such signatures point to specific biological pathways, whereas other signatures defy direct explanation but may become the launch pad for follow-up investigations [ 33 ].

Today’s scientists are very familiar with this discovery-driven exploration of “what’s out there” and might consider it a quaint quirk of history that this strategy was at first widely chastised and ridiculed as a “fishing expedition” [ 30 , 34 ]. Strict traditionalists were outraged that rigor was leaving science with the new approach and that sufficient guidelines were unavailable to assure the validity and reproducibility of results [ 10 , 35 , 36 ].

From the view point of philosophy of science, this second dimension of the scientific method uses inductive reasoning and reflects Bacon’s idea that observations can and should dictate the research question to be investigated [ 1 , 7 ]. Allen [ 36 ] forcefully rejected this type of reasoning, stating “the thinking goes, we can now expect computer programs to derive significance, relevance and meaning from chunks of information, be they nucleotide sequences or gene expression profiles… In contrast with this view, many are convinced that no purely logical process can turn observation into understanding.” His conviction goes back to the 18th century philosopher David Hume and again to Popper, who identified as the overriding problem with inductive reasoning that it can never truly reveal causality, even if a phenomenon is observed time and again [ 16 , 17 , 37 , 38 ]. No number of observations, even if they always have the same result, can guard against an exception that would violate the generality of a law inferred from these observations [ 1 , 35 ]. Worse, Popper argued, through inference by induction, we cannot even know the probability of something being true [ 10 , 17 , 36 ].

Others argued that data-driven and hypothesis-driven research actually do not differ all that much in principle, as long as there is cycling between developing new ideas and testing them with care [ 27 ]. In fact, Kell and Oliver [ 34 ] maintained that the exclusive acceptance of hypothesis-driven programs misrepresents the complexities of biological knowledge generation. Similarly refuting the prominent rule of deduction, Platt [ 26 ] and Beard and Kushmerick [ 27 ] argued that repeated inductive reasoning, called strong inference, corresponds to a logically sound decision tree of disproving or refining hypotheses that can rapidly yield firm conclusions; nonetheless, Platt had to admit that inductive inference is not as certain as deduction, because it projects into the unknown. Lander compared the task of obtaining causality by induction to the problem of inferring the design of a microprocessor from input-output readings, which in a strict sense is impossible, because the microprocessor could be arbitrarily complicated; even so, inference often leads to novel insights and therefore is valuable [ 39 ].

An interesting special case of almost pure inductive reasoning is epidemiology, where hypothesis-driven reasoning is rare and instead, the fundamental question is whether data-based evidence is sufficient to associate health risks with specific causes [ 31 , 34 ].

Recent advances in machine learning and “big-data” mining have driven the use of inductive reasoning to unprecedented heights. As an example, machine learning can greatly assist in the discovery of patterns, for instance, in biological sequences [ 40 ]. Going a step further, a pithy article by Andersen [ 41 ] proffered that we may not need to look for causality or mechanistic explanations anymore if we just have enough correlation: “With enough data, the numbers speak for themselves, correlation replaces causation, and science can advance even without coherent models or unified theories.”

Of course, the proposal to abandon the quest for causality caused pushback on philosophical as well as mathematical grounds. Allen [ 10 , 35 ] considered the idea “absurd” that data analysis could enhance understanding in the absence of a hypothesis. He felt confident “that even the formidable combination of computing power with ease of access to data cannot produce a qualitative shift in the way that we do science: the making of hypotheses remains an indispensable component in the growth of knowledge” [ 36 ]. Succi and Coveney [ 42 ] refuted the “most extravagant claims” of big-data proponents very differently, namely by analyzing the theories on which machine learning is founded. They contrasted the assumptions underlying these theories, such as the law of large numbers, with the mathematical reality of complex biological systems. Specifically, they carefully identified genuine features of these systems, such as nonlinearities, nonlocality of effects, fractal aspects, and high dimensionality, and argued that they fundamentally violate some of the statistical assumptions implicitly underlying big-data analysis, like independence of events. They concluded that these discrepancies “may lead to false expectations and, at their nadir, even to dangerous social, economical and political manipulation.” To ameliorate the situation, the field of big-data analysis would need new strong theorems characterizing the validity of its methods and the numbers of data required for obtaining reliable insights. Succi and Coveney go as far as stating that too many data are just as bad as insufficient data [ 42 ].

While philosophical doubts regarding inductive methods will always persist, one cannot deny that -omics-based, high-throughput studies, combined with machine learning and big-data analysis, have been very successful [ 43 ]. Yes, induction cannot truly reveal general laws, no matter how large the datasets, but they do provide insights that are very different from what science had offered before and may at least suggest novel patterns, trends, or principles. As a case in point, if many transcriptomic studies indicate that a particular gene set is involved in certain classes of phenomena, there is probably some truth to the observation, even though it is not mathematically provable. Kepler’s laws of astronomy were arguably derived solely from inductive reasoning [ 34 ].

Notwithstanding the opposing views on inductive methods, successful strategies shape how we think about science. Thus, to take advantage of all experimental options while ensuring quality of research, we must not allow that “anything goes” but instead identify and characterize standard operating procedures and controls that render this emerging scientific method valid and reproducible. A laudable step in this direction was the wide acceptance of “minimum information about a microarray experiment” (MIAME) standards for microarray experiments [ 44 ].

A third dimension of the scientific method: Allochthonous reasoning

Parallel to the blossoming of molecular biology and the rapid rise in the power and availability of computing in the late 20th century, the use of mathematical and computational models became increasingly recognized as relevant and beneficial for understanding biological phenomena. Indeed, mathematical models eventually achieved cornerstone status in the new field of computational systems biology.

Mathematical modeling has been used as a tool of biological analysis for a long time [ 27 , 45 – 48 ]. Interesting for the discussion here is that the use of mathematical and computational modeling in biology follows a scientific approach that is distinctly different from the traditional and the data-driven methods, because it is distributed over two entirely separate domains of knowledge. One consists of the biological reality of DNA, elephants, and roses, whereas the other is the world of mathematics, which is governed by numbers, symbols, theorems, and abstract work protocols. Because the ways of thinking—and even the languages—are different in these two realms, I suggest calling this type of knowledge acquisition “allochthonous” (literally Greek: in or from a “piece of land different from where one is at home”; one could perhaps translate it into modern lingo as “outside one’s comfort zone”). De facto, most allochthonous reasoning in biology presently refers to mathematics and computing, but one might also consider, for instance, the application of methods from linguistics in the analysis of DNA sequences or proteins [ 49 ].

One could argue that biologists have employed “models” for a long time, for instance, in the form of “model organisms,” cell lines, or in vitro experiments, which more or less faithfully reflect features of the organisms of true interest but are easier to manipulate. However, this type of biological model use is rather different from allochthonous reasoning, as it does not leave the realm of biology and uses the same language and often similar methodologies.

A brief discussion of three experiences from our lab may illustrate the benefits of allochthonous reasoning. (1) In a case study of renal cell carcinoma, a dynamic model was able to explain an observed yet nonintuitive metabolic profile in terms of the enzymatic reaction steps that had been altered during the disease [ 50 ]. (2) A transcriptome analysis had identified several genes as displaying significantly different expression patterns during malaria infection in comparison to the state of health. Considered by themselves and focusing solely on genes coding for specific enzymes of purine metabolism, the findings showed patterns that did not make sense. However, integrating the changes in a dynamic model revealed that purine metabolism globally shifted, in response to malaria, from guanine compounds to adenine, inosine, and hypoxanthine [ 51 ]. (3) Data capturing the dynamics of malaria parasites suggested growth rates that were biologically impossible. Speculation regarding possible explanations led to the hypothesis that many parasite-harboring red blood cells might “hide” from circulation and therewith from detection in the blood stream. While experimental testing of the feasibility of the hypothesis would have been expensive, a dynamic model confirmed that such a concealment mechanism could indeed quantitatively explain the apparently very high growth rates [ 52 ]. In all three cases, the insights gained inductively from computational modeling would have been difficult to obtain purely with experimental laboratory methods. Purely deductive allochthonous reasoning is the ultimate goal of the search for design and operating principles [ 53 – 55 ], which strives to explain why certain structures or functions are employed by nature time and again. An example is a linear metabolic pathway, in which feedback inhibition is essentially always exerted on the first step [ 56 , 57 ]. This generality allows the deduction that a so far unstudied linear pathway is most likely (or even certain to be) inhibited at the first step. Not strictly deductive—but rather abductive—was a study in our lab in which we analyzed time series data with a mathematical model that allowed us to infer the most likely regulatory structure of a metabolic pathway [ 58 , 59 ].

A typical allochthonous investigation begins in the realm of biology with the formulation of a hypothesis ( Fig 3 ). Instead of testing this hypothesis with laboratory experiments, the system encompassing the hypothesis is moved into the realm of mathematics. This move requires two sets of ingredients. One set consists of the simplification and abstraction of the biological system: Any distracting details that seem unrelated to the hypothesis and its context are omitted or represented collectively with other details. This simplification step carries the greatest risk of the entire modeling approach, as omission of seemingly negligible but, in truth, important details can easily lead to wrong results. The second set of ingredients consists of correspondence rules that translate every biological component or process into the language of mathematics [ 60 , 61 ].

This mathematical and computational approach is distributed over two realms, which are connected by correspondence rules.

Once the system is translated, it has become an entirely mathematical construct that can be analyzed purely with mathematical and computational means. The results of this analysis are also strictly mathematical. They typically consist of values of variables, magnitudes of processes, sensitivity patterns, signs of eigenvalues, or qualitative features like the onset of oscillations or the potential for limit cycles. Correspondence rules are used again to move these results back into the realm of biology. As an example, the mathematical result that “two eigenvalues have positive real parts” does not make much sense to many biologists, whereas the interpretation that “the system is not stable at the steady state in question” is readily explained. New biological insights may lead to new hypotheses, which are tested either by experiments or by returning once more to the realm of mathematics. The model design, diagnosis, refinements, and validation consist of several phases, which have been discussed widely in the biomathematical literature. Importantly, each iteration of a typical modeling analysis consists of a move from the biological to the mathematical realm and back.

The reasoning within the realm of mathematics is often deductive, in the form of an Aristotelian syllogism, such as the well-known “All men are mortal; Socrates is a man; therefore, Socrates is mortal.” However, the reasoning may also be inductive, as it is the case with large-scale Monte-Carlo simulations that generate arbitrarily many “observations,” although they cannot reveal universal principles or theorems. An example is a simulation randomly drawing numbers in an attempt to show that every real number has an inverse. The simulation will always attest to this hypothesis but fail to discover the truth because it will never randomly draw 0. Generically, computational models may be considered sets of hypotheses, formulated as equations or as algorithms that reflect our perception of a complex system [ 27 ].

Impact of the multidimensional scientific method on learning

Almost all we know in biology has come from observation, experimentation, and interpretation. The traditional scientific method not only offered clear guidance for this knowledge gathering, but it also fundamentally shaped the way we think about the exploration of nature. When presented with a new research question, scientists were trained to think immediately in terms of hypotheses and alternatives, pondering the best feasible ways of testing them, and designing in their minds strong controls that would limit the effects of known or unknown confounders. Shaped by the rigidity of this ever-repeating process, our thinking became trained to move forward one well-planned step at a time. This modus operandi was rigid and exact. It also minimized the erroneous pursuit of long speculative lines of thought, because every step required testing before a new hypothesis was formed. While effective, the process was also very slow and driven by ingenuity—as well as bias—on the scientist’s part. This bias was sometimes a hindrance to necessary paradigm shifts [ 22 ].

High-throughput data generation, big-data analysis, and mathematical-computational modeling changed all that within a few decades. In particular, the acceptance of inductive principles and of the allochthonous use of nonbiological strategies to answer biological questions created an unprecedented mix of successes and chaos. To the horror of traditionalists, the importance of hypotheses became minimized, and the suggestion spread that the data would speak for themselves [ 36 ]. Importantly, within this fog of “anything goes,” the fundamental question arose how to determine whether an experiment was valid.

Because agreed-upon operating procedures affect research progress and interpretation, thinking, teaching, and sharing of results, this question requires a deconvolution of scientific strategies. Here I proffer that the single scientific method of the past should be expanded toward a vector space of scientific methods, with spanning vectors that correspond to different dimensions of the scientific method ( Fig 4 ).

The traditional hypothesis-based deductive scientific method is expanded into a 3D space that allows for synergistic blends of methods that include data-mining–inspired, inductive knowledge acquisition, and mathematical model-based, allochthonous reasoning.

Obviously, all three dimensions have their advantages and drawbacks. The traditional, hypothesis-driven deductive method is philosophically “clean,” except that it is confounded by preconceptions and assumptions. The data-mining–inspired inductive method cannot offer universal truths but helps us explore very large spaces of factors that contribute to a phenomenon. Allochthonous, model-based reasoning can be performed mentally, with paper and pencil, through rigorous analysis, or with a host of computational methods that are precise and disprovable [ 27 ]. At the same time, they are incomparable faster, cheaper, and much more comprehensive than experiments in molecular biology. This reduction in cost and time, and the increase in coverage, may eventually have far-reaching consequences, as we can already fathom from much of modern physics.

Due to its long history, the traditional dimension of the scientific method is supported by clear and very strong standard operating procedures. Similarly, strong procedures need to be developed for the other two dimensions. The MIAME rules for microarray analysis provide an excellent example [ 44 ]. On the mathematical modeling front, no such rules are generally accepted yet, but trends toward them seem to emerge at the horizon. For instance, it seems to be becoming common practice to include sensitivity analyses in typical modeling studies and to assess the identifiability or sloppiness of ensembles of parameter combinations that fit a given dataset well [ 62 , 63 ].

From a philosophical point of view, it seems unlikely that objections against inductive reasoning will disappear. However, instead of pitting hypothesis-based deductive reasoning against inductivism, it seems more beneficial to determine how the different methods can be synergistically blended ( cf . [ 18 , 27 , 34 , 42 ]) as linear combinations of the three vectors of knowledge acquisition ( Fig 4 ). It is at this point unclear to what degree the identified three dimensions are truly independent of each other, whether additional dimensions should be added [ 24 ], or whether the different versions could be amalgamated into a single scientific method [ 18 ], especially if it is loosely defined as a form of critical thinking [ 8 ]. Nobel Laureate Percy Bridgman even concluded that “science is what scientists do, and there are as many scientific methods as there are individual scientists” [ 8 , 64 ].

Combinations of the three spanning vectors of the scientific method have been emerging for some time. Many biologists already use inductive high-throughput methods to develop specific hypotheses that are subsequently tested with deductive or further inductive methods [ 34 , 65 ]. In terms of including mathematical modeling, physics and geology have been leading the way for a long time, often by beginning an investigation in theory, before any actual experiment is performed. It will benefit biology to look into this strategy and to develop best practices of allochthonous reasoning.

The blending of methods may take quite different shapes. Early on, Ideker and colleagues [ 65 ] proposed an integrated experimental approach for pathway analysis that offered a glimpse of new experimental strategies within the space of scientific methods. In a similar vein, Covert and colleagues [ 66 ] included computational methods into such an integrated approach. Additional examples of blended analyses in systems biology can be seen in other works, such as [ 43 , 67 – 73 ]. Generically, it is often beneficial to start with big data, determine patterns in associations and correlations, then switch to the mathematical realm in order to filter out spurious correlations in a high-throughput fashion. If this procedure is executed in an iterative manner, the “surviving” associations have an increased level of confidence and are good candidates for further experimental or computational testing (personal communication from S. Chandrasekaran).

If each component of a blended scientific method follows strict, commonly agreed guidelines, “linear combinations” within the 3D space can also be checked objectively, per deconvolution. In addition, guidelines for synergistic blends of component procedures should be developed. If we carefully monitor such blends, time will presumably indicate which method is best for which task and how the different approaches optimally inform each other. For instance, it will be interesting to study whether there is an optimal sequence of experiments along the three axes for a particular class of tasks. Big-data analysis together with inductive reasoning might be optimal for creating initial hypotheses and possibly refuting wrong speculations (“we had thought this gene would be involved, but apparently it isn’t”). If the logic of an emerging hypotheses can be tested with mathematical and computational tools, it will almost certainly be faster and cheaper than an immediate launch into wet-lab experimentation. It is also likely that mathematical reasoning will be able to refute some apparently feasible hypothesis and suggest amendments. Ultimately, the “surviving” hypotheses must still be tested for validity through conventional experiments. Deconvolving current practices and optimizing the combination of methods within the 3D or higher-dimensional space of scientific methods will likely result in better planning of experiments and in synergistic blends of approaches that have the potential capacity of addressing some of the grand challenges in biology.

Acknowledgments

The author is very grateful to Dr. Sriram Chandrasekaran and Ms. Carla Kumbale for superb suggestions and invaluable feedback.

Funding Statement

This work was supported in part by grants from the National Science Foundation ( https://www.nsf.gov/div/index.jsp?div=MCB ) grant NSF-MCB-1517588 (PI: EOV), NSF-MCB-1615373 (PI: Diana Downs) and the National Institute of Environmental Health Sciences ( https://www.niehs.nih.gov/ ) grant NIH-2P30ES019776-05 (PI: Carmen Marsit). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Scientific Method Steps in Psychology Research

Steps, Uses, and Key Terms

Kendra Cherry, MS, is a psychosocial rehabilitation specialist, psychology educator, and author of the "Everything Psychology Book."

Emily is a board-certified science editor who has worked with top digital publishing brands like Voices for Biodiversity, Study.com, GoodTherapy, Vox, and Verywell.

Verywell / Theresa Chiechi

How do researchers investigate psychological phenomena? They utilize a process known as the scientific method to study different aspects of how people think and behave.

When conducting research, the scientific method steps to follow are:

• Observe what you want to investigate
• Ask a research question and make predictions
• Test the hypothesis and collect data
• Examine the results and draw conclusions
• Report and share the results 

This process not only allows scientists to investigate and understand different psychological phenomena but also provides researchers and others a way to share and discuss the results of their studies.

Generally, there are five main steps in the scientific method, although some may break down this process into six or seven steps. An additional step in the process can also include developing new research questions based on your findings.

What Is the Scientific Method?

What is the scientific method and how is it used in psychology?

The scientific method consists of five steps. It is essentially a step-by-step process that researchers can follow to determine if there is some type of relationship between two or more variables.

By knowing the steps of the scientific method, you can better understand the process researchers go through to arrive at conclusions about human behavior.

Scientific Method Steps

While research studies can vary, these are the basic steps that psychologists and scientists use when investigating human behavior.

The following are the scientific method steps:

Step 1. Make an Observation

Before a researcher can begin, they must choose a topic to study. Once an area of interest has been chosen, the researchers must then conduct a thorough review of the existing literature on the subject. This review will provide valuable information about what has already been learned about the topic and what questions remain to be answered.

A literature review might involve looking at a considerable amount of written material from both books and academic journals dating back decades.

The relevant information collected by the researcher will be presented in the introduction section of the final published study results. This background material will also help the researcher with the first major step in conducting a psychology study: formulating a hypothesis.

Step 2. Ask a Question

Once a researcher has observed something and gained some background information on the topic, the next step is to ask a question. The researcher will form a hypothesis, which is an educated guess about the relationship between two or more variables

For example, a researcher might ask a question about the relationship between sleep and academic performance: Do students who get more sleep perform better on tests at school?

In order to formulate a good hypothesis, it is important to think about different questions you might have about a particular topic.

You should also consider how you could investigate the causes. Falsifiability is an important part of any valid hypothesis. In other words, if a hypothesis was false, there needs to be a way for scientists to demonstrate that it is false.

Step 3. Test Your Hypothesis and Collect Data

Once you have a solid hypothesis, the next step of the scientific method is to put this hunch to the test by collecting data. The exact methods used to investigate a hypothesis depend on exactly what is being studied. There are two basic forms of research that a psychologist might utilize: descriptive research or experimental research.

Descriptive research is typically used when it would be difficult or even impossible to manipulate the variables in question. Examples of descriptive research include case studies, naturalistic observation , and correlation studies. Phone surveys that are often used by marketers are one example of descriptive research.

Correlational studies are quite common in psychology research. While they do not allow researchers to determine cause-and-effect, they do make it possible to spot relationships between different variables and to measure the strength of those relationships. 

Experimental research is used to explore cause-and-effect relationships between two or more variables. This type of research involves systematically manipulating an independent variable and then measuring the effect that it has on a defined dependent variable .

One of the major advantages of this method is that it allows researchers to actually determine if changes in one variable actually cause changes in another.

While psychology experiments are often quite complex, a simple experiment is fairly basic but does allow researchers to determine cause-and-effect relationships between variables. Most simple experiments use a control group (those who do not receive the treatment) and an experimental group (those who do receive the treatment).

Step 4. Examine the Results and Draw Conclusions

Once a researcher has designed the study and collected the data, it is time to examine this information and draw conclusions about what has been found.  Using statistics , researchers can summarize the data, analyze the results, and draw conclusions based on this evidence.

So how does a researcher decide what the results of a study mean? Not only can statistical analysis support (or refute) the researcher’s hypothesis; it can also be used to determine if the findings are statistically significant.

When results are said to be statistically significant, it means that it is unlikely that these results are due to chance.

Based on these observations, researchers must then determine what the results mean. In some cases, an experiment will support a hypothesis, but in other cases, it will fail to support the hypothesis.

So what happens if the results of a psychology experiment do not support the researcher's hypothesis? Does this mean that the study was worthless?

Just because the findings fail to support the hypothesis does not mean that the research is not useful or informative. In fact, such research plays an important role in helping scientists develop new questions and hypotheses to explore in the future.

After conclusions have been drawn, the next step is to share the results with the rest of the scientific community. This is an important part of the process because it contributes to the overall knowledge base and can help other scientists find new research avenues to explore.

Step 5. Report the Results

The final step in a psychology study is to report the findings. This is often done by writing up a description of the study and publishing the article in an academic or professional journal. The results of psychological studies can be seen in peer-reviewed journals such as  Psychological Bulletin , the  Journal of Social Psychology ,  Developmental Psychology , and many others.

The structure of a journal article follows a specified format that has been outlined by the  American Psychological Association (APA) . In these articles, researchers:

• Provide a brief history and background on previous research
• Present their hypothesis
• Identify who participated in the study and how they were selected
• Provide operational definitions for each variable
• Describe the measures and procedures that were used to collect data
• Explain how the information collected was analyzed
• Discuss what the results mean

Why is such a detailed record of a psychological study so important? By clearly explaining the steps and procedures used throughout the study, other researchers can then replicate the results. The editorial process employed by academic and professional journals ensures that each article that is submitted undergoes a thorough peer review, which helps ensure that the study is scientifically sound.

Once published, the study becomes another piece of the existing puzzle of our knowledge base on that topic.

Before you begin exploring the scientific method steps, here's a review of some key terms and definitions that you should be familiar with:

• Falsifiable : The variables can be measured so that if a hypothesis is false, it can be proven false
• Hypothesis : An educated guess about the possible relationship between two or more variables
• Variable : A factor or element that can change in observable and measurable ways
• Operational definition : A full description of exactly how variables are defined, how they will be manipulated, and how they will be measured

Uses for the Scientific Method

The  goals of psychological studies  are to describe, explain, predict and perhaps influence mental processes or behaviors. In order to do this, psychologists utilize the scientific method to conduct psychological research. The scientific method is a set of principles and procedures that are used by researchers to develop questions, collect data, and reach conclusions.

Goals of Scientific Research in Psychology

Researchers seek not only to describe behaviors and explain why these behaviors occur; they also strive to create research that can be used to predict and even change human behavior.

Psychologists and other social scientists regularly propose explanations for human behavior. On a more informal level, people make judgments about the intentions, motivations , and actions of others on a daily basis.

While the everyday judgments we make about human behavior are subjective and anecdotal, researchers use the scientific method to study psychology in an objective and systematic way. The results of these studies are often reported in popular media, which leads many to wonder just how or why researchers arrived at the conclusions they did.

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The scientific method essay sample, example.

If you drop your shoe and a coin side by side, they hit the ground at the same time. Why does not the shoe get there first, since gravity is pulling harder on it? How does the lens of your eye work, and why do your eye’s muscles need to squash its lens into different shapes in order to focus on objects nearby or far away? These are the kinds of questions that physics tries to answer about the behavior of light and matter, the two things that the universe is made of.

Until very recently in history, no progress was made in answering questions like these. Worse than that, the wrong answers written by thinkers like the ancient Greek physicist Aristotle were accepted without question for thousands of years. Why is it that scientific knowledge has progressed more since the Renaissance than it had in all the preceding millennia since the beginning of recorded history? Undoubtedly the industrial revolution is part of the answer. Building its centerpiece, the steam engine, required improved techniques for precise construction and measurement (early on, it was considered a major advance when English machine shops learned to build pistons and cylinders that fit together with a gap narrower than the thickness of a penny). But even before the industrial revolution, the pace of discovery had picked up, mainly because of the introduction of the modern scientific method. Although it evolved over time, most scientists today would agree on something like the following list of the basic principles of the scientific method:

• Science is a cycle of theory and experiment.

Scientific theories are created to explain the results of experiments that were created under certain conditions. A successful theory will also make new predictions about new experiments under new conditions. Eventually, though, it always seems to happen that a new experiment comes along, showing that under certain conditions the theory is not a good approximation or is not valid at all. The ball is then back in the theorists’ court. If an experiment disagrees with the current theory, the theory has to be changed, not the experiment.

• Theories should both predict and explain.

The requirement of predictive power means that a theory is only meaningful if it predicts something that can be checked against experimental measurements the theorist did not already have at hand. That is, a theory should be testable. Explanatory value means that many phenomena should be accounted for with few basic principles. If you answer every “why” question with “because that’s the way it is,” then your theory has no explanatory value. Collecting lots of data without being able to find any basic underlying principles is not science.

• Experiments should be reproducible.

An experiment should be treated with suspicion if it only works for one person, or only in one part of the world. Anyone with the necessary skills and equipment should be able to get the same results from the same experiment. This implies that science transcends national and ethnic boundaries; you can be sure that nobody is doing actual science who claims that their work is “Aryan, not Jewish,” “Marxist, not bourgeois,” or “Christian, not atheistic.” An experiment cannot be reproduced if it is secret, so science is necessarily a public enterprise.

As an example of the cycle of theory and experiment, a vital step toward modern chemistry was the experimental observation that the chemical elements could not be transformed into each other, e.g., lead could not be turned into gold. This led to the theory that chemical reactions consisted of rearrangements of the elements in different combinations, without any change in the identities of the elements themselves. The theory worked for hundreds of years, and was confirmed experimentally over a wide range of pressures and temperatures and with many combinations of elements. Only in the twentieth century did we learn that one element could be trans-formed into one another under the conditions of extremely high pressure and temperature existing in a nuclear bomb or inside a star. That observation did not completely invalidate the original theory of the immutability of the elements, but it showed that it was only an approximation, valid at ordinary temperatures and pressures.

The scientific method as described here is an idealization, and should not be understood as a set procedure for doing science. Scientists have as many weaknesses and character flaws as any other group, and it is common for scientists to try to discredit other people’s experiments when the results run contrary to their own favored point of view. Successful science also has more to do with luck, intuition, and creativity than most people realize, and the restrictions of the scientific method do not stifle individuality and self-expression any more than the fugue and sonata forms stifled Bach and Haydn. There is a recent tendency among social scientists to go even further and to deny that the scientific method even exists, claiming that science is no more than an arbitrary social system that determines what ideas to accept based on an in-group’s criteria. I think that is going too far. If science is an arbitrary social ritual, it would seem difficult to explain its effectiveness in building such useful items as airplanes, CD players, and sewers. If alchemy and astrology were no less scientific in their methods than chemistry and astronomy, what was it that kept them from producing anything useful?

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Writing the Scientific Paper

When you write about scientific topics to specialists in a particular scientific field, we call that scientific writing. (When you write to non-specialists about scientific topics, we call that science writing.)

The scientific paper has developed over the past three centuries into a tool to communicate the results of scientific inquiry. The main audience for scientific papers is extremely specialized. The purpose of these papers is twofold: to present information so that it is easy to retrieve, and to present enough information that the reader can duplicate the scientific study. A standard format with six main part helps readers to find expected information and analysis:

• Title--subject and what aspect of the subject was studied.
• Abstract--summary of paper: The main reason for the study, the primary results, the main conclusions
• Introduction-- why the study was undertaken
• Methods and Materials-- how the study was undertaken
• Results-- what was found
• Discussion-- why these results could be significant (what the reasons might be for the patterns found or not found)

There are many ways to approach the writing of a scientific paper, and no one way is right. Many people, however, find that drafting chunks in this order works best: Results, Discussion, Introduction, Materials & Methods, Abstract, and, finally, Title.

The title should be very limited and specific. Really, it should be a pithy summary of the article's main focus.

• "Renal disease susceptibility and hypertension are under independent genetic control in the fawn hooded rat"
• "Territory size in Lincoln's Sparrows ( Melospiza lincolnii )"
• "Replacement of deciduous first premolars and dental eruption in archaeocete whales"
• "The Radio-Frequency Single-Electron Transistor (RF-SET): A Fast and Ultrasensitive Electrometer"

This is a summary of your article. Generally between 50-100 words, it should state the goals, results, and the main conclusions of your study. You should list the parameters of your study (when and where was it conducted, if applicable; your sample size; the specific species, proteins, genes, etc., studied). Think of the process of writing the abstract as taking one or two sentences from each of your sections (an introductory sentence, a sentence stating the specific question addressed, a sentence listing your main techniques or procedures, two or three sentences describing your results, and one sentence describing your main conclusion).

Example One

Hypertension, diabetes and hyperlipidemia are risk factors for life-threatening complications such as end-stage renal disease, coronary artery disease and stroke. Why some patients develop complications is unclear, but only susceptibility genes may be involved. To test this notion, we studied crosses involving the fawn-hooded rat, an animal model of hypertension that develops chronic renal failure. Here, we report the localization of two genes, Rf-1 and Rf-2 , responsible for about half of the genetic variation in key indices of renal impairment. In addition, we localize a gene, Bpfh-1 , responsible for about 26% of the genetic variation in blood pressure. Rf-1 strongly affects the risk of renal impairment, but has no significant effect on blood pressure. Our results show that susceptibility to a complication of hypertension is under at least partially independent genetic control from susceptibility to hypertension itself.

Brown, Donna M, A.P. Provoost, M.J. Daly, E.S. Lander, & H.J. Jacob. 1996. "Renal disease susceptibility and hypertension are under indpendent genetic control in the faun-hooded rat." Nature Genetics , 12(1):44-51.

Example Two

We studied survival of 220 calves of radiocollared moose ( Alces alces ) from parturition to the end of July in southcentral Alaska from 1994 to 1997. Prior studies established that predation by brown bears ( Ursus arctos ) was the primary cause of mortality of moose calves in the region. Our objectives were to characterize vulnerability of moose calves to predation as influenced by age, date, snow depths, and previous reproductive success of the mother. We also tested the hypothesis that survival of twin moose calves was independent and identical to that of single calves. Survival of moose calves from parturition through July was 0.27 ± 0.03 SE, and their daily rate of mortality declined at a near constant rate with age in that period. Mean annual survival was 0.22 ± 0.03 SE. Previous winter's snow depths or survival of the mother's previous calf was not related to neonatal survival. Selection for early parturition was evidenced in the 4 years of study by a 6.3% increase in the hazard of death with each daily increase in parturition date. Although there was no significant difference in survival of twin and single moose calves, most twins that died disappeared together during the first 15 days after birth and independently thereafter, suggesting that predators usually killed both when encountered up to that age.

Key words: Alaska, Alces alces , calf survival, moose, Nelchina, parturition synchrony, predation

Testa, J.W., E.F. Becker, & G.R. Lee. 2000. "Temporal patterns in the survival of twin and single moose ( alces alces ) calves in southcentral Alaska." Journal of Mammalogy , 81(1):162-168.

Example Three

We monitored breeding phenology and population levels of Rana yavapaiensis by use of repeated egg mass censuses and visual encounter surveys at Agua Caliente Canyon near Tucson, Arizona, from 1994 to 1996. Adult counts fluctuated erratically within each year of the study but annual means remained similar. Juvenile counts peaked during the fall recruitment season and fell to near zero by early spring. Rana yavapaiensis deposited eggs in two distinct annual episodes, one in spring (March-May) and a much smaller one in fall (September-October). Larvae from the spring deposition period completed metamorphosis in earlv summer. Over the two years of study, 96.6% of egg masses successfully produced larvae. Egg masses were deposited during periods of predictable, moderate stream flow, but not during seasonal periods when flash flooding or drought were likely to affect eggs or larvae. Breeding phenology of Rana yavapaiensis is particularly well suited for life in desert streams with natural flow regimes which include frequent flash flooding and drought at predictable times. The exotic predators of R. yavapaiensis are less able to cope with fluctuating conditions. Unaltered stream flow regimes that allow natural fluctuations in stream discharge may provide refugia for this declining ranid frog from exotic predators by excluding those exotic species that are unable to cope with brief flash flooding and habitat drying.

Sartorius, Shawn S., and Philip C. Rosen. 2000. "Breeding phenology of the lowland leopard frog ( Rana yavepaiensis )." Southwestern Naturalist , 45(3): 267-273.

Introduction

The introduction is where you sketch out the background of your study, including why you have investigated the question that you have and how it relates to earlier research that has been done in the field. It may help to think of an introduction as a telescoping focus, where you begin with the broader context and gradually narrow to the specific problem addressed by the report. A typical (and very useful) construction of an introduction proceeds as follows:

"Echimyid rodents of the genus Proechimys (spiny rats) often are the most abundant and widespread lowland forest rodents throughout much of their range in the Neotropics (Eisenberg 1989). Recent studies suggested that these rodents play an important role in forest dynamics through their activities as seed predators and dispersers of seeds (Adler and Kestrell 1998; Asquith et al 1997; Forget 1991; Hoch and Adler 1997)." (Lambert and Adler, p. 70)

"Our laboratory has been involved in the analysis of the HLA class II genes and their association with autoimmune disorders such as insulin-dependent diabetes mellitus. As part of this work, the laboratory handles a large number of blood samples. In an effort to minimize the expense and urgency of transportation of frozen or liquid blood samples, we have designed a protocol that will preserve the integrity of lymphocyte DNA and enable the transport and storage of samples at ambient temperatures." (Torrance, MacLeod & Hache, p. 64)

"Despite the ubiquity and abundance of P. semispinosus , only two previous studies have assessed habitat use, with both showing a generalized habitat use. [brief summary of these studies]." (Lambert and Adler, p. 70)

"Although very good results have been obtained using polymerase chain reaction (PCR) amplification of DNA extracted from dried blood spots on filter paper (1,4,5,8,9), this preservation method yields limited amounts of DNA and is susceptible to contamination." (Torrance, MacLeod & Hache, p. 64)

"No attempt has been made to quantitatively describe microhabitat characteristics with which this species may be associated. Thus, specific structural features of secondary forests that may promote abundance of spiny rats remains unknown. Such information is essential to understand the role of spiny rats in Neotropical forests, particularly with regard to forest regeneration via interactions with seeds." (Lambert and Adler, p. 71)

"As an alternative, we have been investigating the use of lyophilization ("freeze-drying") of whole blood as a method to preserve sufficient amounts of genomic DNA to perform PCR and Southern Blot analysis." (Torrance, MacLeod & Hache, p. 64)

"We present an analysis of microhabitat use by P. semispinosus in tropical moist forests in central Panama." (Lambert and Adler, p. 71)

"In this report, we summarize our analysis of genomic DNA extracted from lyophilized whole blood." (Torrance, MacLeod & Hache, p. 64)

Methods and Materials

In this section you describe how you performed your study. You need to provide enough information here for the reader to duplicate your experiment. However, be reasonable about who the reader is. Assume that he or she is someone familiar with the basic practices of your field.

It's helpful to both writer and reader to organize this section chronologically: that is, describe each procedure in the order it was performed. For example, DNA-extraction, purification, amplification, assay, detection. Or, study area, study population, sampling technique, variables studied, analysis method.

Include in this section:

• study design: procedures should be listed and described, or the reader should be referred to papers that have already described the used procedure
• particular techniques used and why, if relevant
• modifications of any techniques; be sure to describe the modification
• specialized equipment, including brand-names
• temporal, spatial, and historical description of study area and studied population
• assumptions underlying the study
• statistical methods, including software programs

Example description of activity

Chromosomal DNA was denatured for the first cycle by incubating the slides in 70% deionized formamide; 2x standard saline citrate (SSC) at 70ºC for 2 min, followed by 70% ethanol at -20ºC and then 90% and 100% ethanol at room temperature, followed by air drying. (Rouwendal et al ., p. 79)

Example description of assumptions

We considered seeds left in the petri dish to be unharvested and those scattered singly on the surface of a tile to be scattered and also unharvested. We considered seeds in cheek pouches to be harvested but not cached, those stored in the nestbox to be larderhoarded, and those buried in caching sites within the arena to be scatterhoarded. (Krupa and Geluso, p. 99)

Examples of use of specialized equipment

• Oligonucleotide primers were prepared using the Applied Biosystems Model 318A (Foster City, CA) DNA Synthesizer according to the manufacturers' instructions. (Rouwendal et al ., p.78)
• We first visually reviewed the complete song sample of an individual using spectrograms produced on a Princeton Applied Research Real Time Spectrum Analyzer (model 4512). (Peters et al ., p. 937)

Example of use of a certain technique

Frogs were monitored using visual encounter transects (Crump and Scott, 1994). (Sartorius and Rosen, p. 269)

Example description of statistical analysis

We used Wilcox rank-sum tests for all comparisons of pre-experimental scores and for all comparisons of hue, saturation, and brightness scores between various groups of birds ... All P -values are two-tailed unless otherwise noted. (Brawner et al ., p. 955)

This section presents the facts--what was found in the course of this investigation. Detailed data--measurements, counts, percentages, patterns--usually appear in tables, figures, and graphs, and the text of the section draws attention to the key data and relationships among data. Three rules of thumb will help you with this section:

• present results clearly and logically
• avoid excess verbiage
• consider providing a one-sentence summary at the beginning of each paragraph if you think it will help your reader understand your data

Remember to use table and figures effectively. But don't expect these to stand alone.

Some examples of well-organized and easy-to-follow results:

• Size of the aquatic habitat at Agua Caliente Canyon varied dramatically throughout the year. The site contained three rockbound tinajas (bedrock pools) that did not dry during this study. During periods of high stream discharge seven more seasonal pools and intermittent stretches of riffle became available. Perennial and seasonal pool levels remained stable from late February through early May. Between mid-May and mid-July seasonal pools dried until they disappeared. Perennial pools shrank in surface area from a range of 30-60 m² to 3-5- M². (Sartorius and Rosen, Sept. 2000: 269)

Notice how the second sample points out what is important in the accompanying figure. It makes us aware of relationships that we may not have noticed quickly otherwise and that will be important to the discussion.

A similar test result is obtained with a primer derived from the human ß-satellite... This primer (AGTGCAGAGATATGTCACAATG-CCCC: Oligo 435) labels 6 sites in the PRINS reaction: the chromosomes 1, one pair of acrocentrics and, more weakly, the chromosomes 9 (Fig. 2a). After 10 cycles of PCR-IS, the number of sites labeled has doubled (Fig. 2b); after 20 cycles, the number of sites labeled is the same but the signals are stronger (Fig. 2c) (Rouwendal et al ., July 93:80).

Related Information: Use Tables and Figures Effectively

Do not repeat all of the information in the text that appears in a table, but do summarize it. For example, if you present a table of temperature measurements taken at various times, describe the general pattern of temperature change and refer to the table.

"The temperature of the solution increased rapidly at first, going from 50º to 80º in the first three minutes (Table 1)."

You don't want to list every single measurement in the text ("After one minute, the temperature had risen to 55º. After two minutes, it had risen to 58º," etc.). There is no hard and fast rule about when to report all measurements in the text and when to put the measurements in a table and refer to them, but use your common sense. Remember that readers have all that data in the accompanying tables and figures, so your task in this section is to highlight key data, changes, or relationships.

In this section you discuss your results. What aspect you choose to focus on depends on your results and on the main questions addressed by them. For example, if you were testing a new technique, you will want to discuss how useful this technique is: how well did it work, what are the benefits and drawbacks, etc. If you are presenting data that appear to refute or support earlier research, you will want to analyze both your own data and the earlier data--what conditions are different? how much difference is due to a change in the study design, and how much to a new property in the study subject? You may discuss the implication of your research--particularly if it has a direct bearing on a practical issue, such as conservation or public health.

This section centers on speculation . However, this does not free you to present wild and haphazard guesses. Focus your discussion around a particular question or hypothesis. Use subheadings to organize your thoughts, if necessary.

This section depends on a logical organization so readers can see the connection between your study question and your results. One typical approach is to make a list of all the ideas that you will discuss and to work out the logical relationships between them--what idea is most important? or, what point is most clearly made by your data? what ideas are subordinate to the main idea? what are the connections between ideas?

Achieving the Scientific Voice

Eight tips will help you match your style for most scientific publications.

• Develop a precise vocabulary: read the literature to become fluent, or at least familiar with, the sort of language that is standard to describe what you're trying to describe.
• Once you've labeled an activity, a condition, or a period of time, use that label consistently throughout the paper. Consistency is more important than creativity.
• Define your terms and your assumptions.
• Include all the information the reader needs to interpret your data.
• Remember, the key to all scientific discourse is that it be reproducible . Have you presented enough information clearly enough that the reader could reproduce your experiment, your research, or your investigation?
• When describing an activity, break it down into elements that can be described and labeled, and then present them in the order they occurred.
• When you use numbers, use them effectively. Don't present them so that they cause more work for the reader.
• Include details before conclusions, but only include those details you have been able to observe by the methods you have described. Do not include your feelings, attitudes, impressions, or opinions.
• Research your format and citations: do these match what have been used in current relevant journals?
• Run a spellcheck and proofread carefully. Read your paper out loud, and/ or have a friend look over it for misspelled words, missing words, etc.

Applying the Principles, Example 1

The following example needs more precise information. Look at the original and revised paragraphs to see how revising with these guidelines in mind can make the text clearer and more informative:

Before: Each male sang a definite number of songs while singing. They start with a whistle and then go from there. Each new song is always different, but made up an overall repertoire that was completed before starting over again. In 16 cases (84%), no new songs were sung after the first 20, even though we counted about 44 songs for each bird.

After: Each male used a discrete number of song types in his singing. Each song began with an introductory whistle, followed by a distinctive, complex series of fluty warbles (Fig. 1). Successive songs were always different, and five of the 19 males presented their entire song repertoire before repeating any of their song types (i.e., the first IO recorded songs revealed the entire repertoire of 10 song types). Each song type recurred in long sequences of singing, so that we could be confident that we had recorded the entire repertoire of commonly used songs by each male. For 16 of the 19 males, no new song types were encountered after the first 20 songs, even though we analyzed and average of 44 songs/male (range 30-59).

Applying the Principles, Example 2

In this set of examples, even a few changes in wording result in a more precise second version. Look at the original and revised paragraphs to see how revising with these guidelines in mind can make the text clearer and more informative:

Before: The study area was on Mt. Cain and Maquilla Peak in British Columbia, Canada. The study area is about 12,000 ha of coastal montane forest. The area is both managed and unmanaged and ranges from 600-1650m. The most common trees present are mountain hemlock ( Tsuga mertensiana ), western hemlock ( Tsuga heterophylla ), yellow cedar ( Chamaecyparis nootkatensis ), and amabilis fir ( Abies amabilis ).

After: The study took place on Mt. Cain and Maquilla Peak (50'1 3'N, 126'1 8'W), Vancouver Island, British Columbia. The study area encompassed 11,800 ha of coastal montane forest. The landscape consisted of managed and unmanaged stands of coastal montane forest, 600-1650 m in elevation. The dominant tree species included mountain hemlock ( Tsuga mertensiana ), western hemlock ( Tsuga heterophylla ), yellow cedar ( Chamaecyparis nootkatensis ), and amabilis fir ( Abies amabilis ).

Two Tips for Sentence Clarity

Although you will want to consider more detailed stylistic revisions as you become more comfortable with scientific writing, two tips can get you started:

First, the verb should follow the subject as soon as possible.

Really Hard to Read : "The smallest of the URF's (URFA6L), a 207-nucleotide (nt) reading frame overlapping out of phase the NH2- terminal portion of the adenosinetriphosphatase (ATPase) subunit 6 gene has been identified as the animal equivalent of the recently discovered yeast H+-ATPase subunit gene."

Less Hard to Read : "The smallest of the UR-F's is URFA6L, a 207-nucleotide (nt) reading frame overlapping out of phase the NH2-terminal portion of the adenosinetriphosphatase (ATPase) subunit 6 gene; it has been identified as the animal equivalent of the recently discovered yeast H+-ATPase subunit 8 gene."

Second, place familiar information first in a clause, a sentence, or a paragraph, and put the new and unfamiliar information later.

More confusing : The epidermis, the dermis, and the subcutaneous layer are the three layers of the skin. A layer of dead skin cells makes up the epidermis, which forms the body's shield against the world. Blood vessels, carrying nourishment, and nerve endings, which relay information about the outside world, are found in the dermis. Sweat glands and fat cells make up the third layer, the subcutaneous layer.

Less confusing : The skin consists of three layers: the epidermis, the dermis, and the subcutaneous layer. The epidermis is made up of dead skin cells, and forms a protective shield between the body and the world. The dermis contains the blood vessels and nerve endings that nourish the skin and make it receptive to outside stimuli. The subcutaneous layer contains the sweat glands and fat cells which perform other functions of the skin.

Bibliography

• Scientific Writing for Graduate Students . F. P. Woodford. Bethesda, MD: Council of Biology Editors, 1968. [A manual on the teaching of writing to graduate students--very clear and direct.]
• Scientific Style and Format . Council of Biology Editors. Cambridge: Cambridge University Press, 1994.
• "The science of scientific writing." George Gopen and Judith Swann. The American Scientist , Vol. 78, Nov.-Dec. 1990. Pp 550-558.
• "What's right about scientific writing." Alan Gross and Joseph Harmon. The Scientist , Dec. 6 1999. Pp. 20-21.
• "A Quick Fix for Figure Legends and Table Headings." Donald Kroodsma. The Auk , 117 (4): 1081-1083, 2000.

Wortman-Wunder, Emily, & Kate Kiefer. (1998). Writing the Scientific Paper. Writing@CSU . Colorado State University. https://writing.colostate.edu/resources/writing/guides/.

The scientific method and climate change: How scientists know

By Holly Shaftel, NASA's Jet Propulsion Laboratory

The scientific method is the gold standard for exploring our natural world. You might have learned about it in grade school, but here’s a quick reminder: It’s the process that scientists use to understand everything from animal behavior to the forces that shape our planet—including climate change.

“The way science works is that I go out and study something, and maybe I collect data or write equations, or I run a big computer program,” said Josh Willis, principal investigator of NASA’s Oceans Melting Greenland (OMG) mission and oceanographer at NASA’s Jet Propulsion Laboratory. “And I use it to learn something about how the world works.”

Using the scientific method, scientists have shown that humans are extremely likely the dominant cause of today’s climate change. The story goes back to the late 1800s, but in 1958, for example, Charles Keeling of the Mauna Loa Observatory in Waimea, Hawaii, started taking meticulous measurements of carbon dioxide (CO 2 ) in the atmosphere, showing the first significant evidence of rapidly rising CO 2 levels and producing the Keeling Curve climate scientists know today.

“The way science works is that I go out and study something, and maybe I collect data or write equations, or I run a big computer program, and I use it to learn something about how the world works.”- Josh Willis, NASA oceanographer and Oceans Melting Greenland principal investigator

Since then, thousands of peer-reviewed scientific papers have come to the same conclusion about climate change, telling us that human activities emit greenhouse gases into the atmosphere, raising Earth’s average temperature and bringing a range of consequences to our ecosystems.

“The weight of all of this information taken together points to the single consistent fact that humans and our activity are warming the planet,” Willis said.

The scientific method’s steps

The exact steps of the scientific method can vary by discipline, but since we have only one Earth (and no “test” Earth), climate scientists follow a few general guidelines to better understand carbon dioxide levels, sea level rise, global temperature and more.

• Form a hypothesis (a statement that an experiment can test)
• Make observations (conduct experiments and gather data)
• Analyze and interpret the data
• Draw conclusions
• Publish results that can be validated with further experiments (rinse and repeat)

As you can see, the scientific method is iterative (repetitive), meaning that climate scientists are constantly making new discoveries about the world based on the building blocks of scientific knowledge.

“The weight of all of this information taken together points to the single consistent fact that humans and our activity are warming the planet." - Josh Willis, NASA oceanographer and Oceans Melting Greenland principal investigator

The scientific method at work.

How does the scientific method work in the real world of climate science? Let’s take NASA’s Oceans Melting Greenland (OMG) campaign, a multi-year survey of Greenland’s ice melt that’s paving the way for improved sea level rise estimates, as an example.

• Form a hypothesis OMG hypothesizes that the oceans are playing a major role in Greenland ice loss.
• Make observations Over a five-year period, OMG will survey Greenland by air and ship to collect ocean temperature and salinity (saltiness) data and take ice thinning measurements to help climate scientists better understand how the ice and warming ocean interact with each other. OMG will also collect data on the sea floor’s shape and depth, which determines how much warm water can reach any given glacier.
• Analyze and interpret data As the OMG crew and scientists collect data around 27,000 miles (over 43,000 kilometers) of Greenland coastline over that five-year period, each year scientists will analyze the data to see how much the oceans warmed or cooled and how the ice changed in response.
• Draw conclusions In one OMG study , scientists discovered that many Greenland glaciers extend deeper (some around 1,000 feet, or about 300 meters) beneath the ocean’s surface than once thought, making them quite vulnerable to the warming ocean. They also discovered that Greenland’s west coast is generally more vulnerable than its east coast.
• Publish results Scientists like Willis write up the results, send in the paper for peer review (a process in which other experts in the field anonymously critique the submission), and then those peers determine whether the information is correct and valuable enough to be published in an academic journal, such as Nature or Earth and Planetary Science Letters . Then it becomes another contribution to the well-substantiated body of climate change knowledge, which evolves and grows stronger as scientists gather and confirm more evidence. Other scientists can take that information further by conducting their own studies to better understand sea level rise.

All in all, the scientific method is “a way of going from observations to answers,” NASA terrestrial ecosystem scientist Erika Podest, based at JPL, said. It adds clarity to our way of thinking and shows that scientific knowledge is always evolving.

Related Terms

• Climate Change
• Climate Science
• Earth Science

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Importance of the Scientific Method

The scientific method attempts to minimize the influence of bias or prejudice in the experimenter. Even the best-intentioned scientists can't escape bias. It results from personal beliefs, as well as cultural beliefs, which means any human filters information based on his or her own experience. Unfortunately, this filtering process can cause a scientist to prefer one outcome over another. For someone trying to solve a problem around the house, succumbing to these kinds of biases is not such a big deal. But in the scientific community, where results have to be reviewed and duplicated, bias must be avoided at all costs.

­T­hat's the job of the scientific method. It provides an objective, standardized approach to conducting experiments and, in doing so, improves their results. By using a standardized approach in their investigations, scientists can feel confident that they will stick to the facts and limit the influence of personal, preconceived notions. Even with such a rigorous methodology in place, some scientists still make mistakes. For example, they can mistake a hypothesis for an explanation of a phenomenon without performing experiments. Or they can fail to accurately account for errors, such as measurement errors. Or they can ignore data that does not support the hypothesis.

Gregor Mendel (1822-1884), an Austrian priest who studied the inheritance of traits in pea plants and helped pioneer the study of genetics, may have fallen victim to a kind of error known as confirmation bias . Confirmation bias is the tendency to see data that supports a hypothesis while ignoring data that does not. Some argue that Mendel obtained a certain result using a small sample size, then continued collecting and censoring data to make sure his original result was confirmed. Although subsequent experiments have proven Mendel's hypothesis, many people still question his methods of experimentation.

Most of the time, however, the scientific method works and works well. When a hypothesis or a group of related hypotheses have been confirmed through repeated experimental tests, it may become a theory , which can be thought of as the pot of gold at the end of the scientific method rainbow.

Theories are much broader in scope than hypotheses and hold enormous predictive power. The theory of relativity, for example, predicted the existence of black holes long before there was evidence to support the idea. It should be noted, however, that one of the goals of science is not to prove theories right, but to prove them wrong. When this happens, a theory must be modified or discarded altogether.

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